Browse Element(s) Details


Os.35590.3.S1_x_at

Description gb:NM_186841.1
DB_XREF= gi:34900767
GEN=P0021G06.6
TID=Os.35590.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 3, At3g06920 (P0021G06.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 3, At3g06920 (P0021G06.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1453010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14490OsAffx.30223.2.S1_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14490OsAffx.30223.1.S1_s_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14500OsAffx.30223.1.S1_at11/117+8257378..8258557hypothetical protein
LOC_Os07g14514Os.38884.2.S1_x_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.27723.1.S1_a_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38884.1.S1_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38157.1.S1_s_at1/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14530Os.35590.2.S1_at11/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.3.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.1.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14540Os.8775.1.S1_at11/117+8286140..8289457Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g14549NANA7+8291920..8292728NA
LOC_Os07g14560OsAffx.21161.1.S1_at1/117+8301301..8305674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14570OsAffx.31069.1.S1_x_at10/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.4.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.1.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_at5/117+8306602..8311006hypothetical protein
LOC_Os07g14570Os.53479.1.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.14745.1.S1_at2/117+8306602..8311006hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35590.3.S1_x_at--24--8811Chr07:8282502..8282526 (25 bp)
TGTTCTGTACAGCTCTCTCATAGAT
LOC_Os07g14530
Os.35590.3.S1_x_at--143--9851Chr07:8282350..8282374 (25 bp)
TAAATGAGGCGCTTGTCTGTTTCCA
LOC_Os07g14530
Os.35590.3.S1_x_at--14--5591Chr07:8282310..8282334 (25 bp)
GAAATGCCCACCAAACACTTATACA
LOC_Os07g14530
Os.35590.3.S1_x_at--475--1391Chr07:8282284..8282308 (25 bp)
ACAGCATTCTTATAAACGGCCTTTG
LOC_Os07g14530
Os.35590.3.S1_x_at--411--3911Chr07:8282268..8282292 (25 bp)
CGGCCTTTGCCGTGTACAGAAGTAC
LOC_Os07g14530
Os.35590.3.S1_x_at--973--4931Chr07:8282203..8282227 (25 bp)
GCTTGGTCCCTAATGTGGTCACTTA
LOC_Os07g14530
Os.35590.3.S1_x_at--586--7091Chr07:8282186..8282210 (25 bp)
GTCACTTACACAACCATGATCTCGG
LOC_Os07g14530
Os.35590.3.S1_x_at--982--2571Chr07:8282139..8282163 (25 bp)
AACGGATGCTTACAGCCTCTTTGAG
LOC_Os07g14530
Os.35590.3.S1_x_at--866--7511Chr07:8282098..8282122 (25 bp)
GTGGAATTCCTGACGCTGCAAGTTT
LOC_Os07g14530
Os.35590.3.S1_x_at--970--6191NONE
GAGGCATATCAGATCATGCTTGCTG
NONE
Os.35590.3.S1_x_at--84--691Chr07:8280917..8280941 (25 bp)
ATGACTGCAGCTCAGTTCTAGCTCA
LOC_Os07g14530
Target Sequence 
TGTTCTGTACAGCTCTCTCATAGATGGCTTTGGGAAGGTTGGTAGGATAGATGAAGCTTATTTAATTTTAGAAGAAATGA
TGAAGAAGGGTTTGACTCCAAATGTGTACACATGGAATAGCCTCTTGGATGCTTTAGTGAAAGCTGAAGAAATAAATGAG
GCGCTTGTCTGTTTCCAGTCAATGAAGGAAATGAAATGCCCACCAAACACTTATACATACAGCATTCTTATAAACGGCCT
TTGCCGTGTACAGAAGTACAATAAAGCTTTTGTGTTCTGGCAAGATATGCAGAAACAGGGCTTGGTCCCTAATGTGGTCA
CTTACACAACCATGATCTCGGGGCTTGCAAAGGTAGGAAACATAACGGATGCTTACAGCCTCTTTGAGAGGTTTAAGGCC
AATGGTGGAATTCCTGACGCTGCAAGTTTCAATGCTCTTATAGAGGGAATGAGCAATGCAAATAGAGCGATGGAGGCATA
TCAGATCATGCTTGCTGCTGCTCCAAATGACTGCAGCTCAGTTCTAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35590.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis