Browse Element(s) Details


OsAffx.31069.1.S1_at

Description gb:NM_186844.1
DB_XREF= gi:34900773
GEN=P0021G06.11
TID=OsAffx.31069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 1, P0672D08.19 (P0021G06.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g145709/11hypothetical protein
LOC_Os04g490403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g410803/11retrotransposon protein, putative, unclassified
LOC_Os03g486903/11retrotransposon protein, putative, unclassified
LOC_Os11g144502/11retrotransposon protein, putative, unclassified
LOC_Os01g164802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g318501/11retrotransposon protein, putative, unclassified
LOC_Os02g542201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14530Os.35590.2.S1_at11/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.3.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.1.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14540Os.8775.1.S1_at11/117+8286140..8289457Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g14549NANA7+8291920..8292728NA
LOC_Os07g14560OsAffx.21161.1.S1_at1/117+8301301..8305674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14570OsAffx.31069.1.S1_x_at10/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.4.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.1.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_at5/117+8306602..8311006hypothetical protein
LOC_Os07g14570Os.53479.1.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.14745.1.S1_at2/117+8306602..8311006hypothetical protein
LOC_Os07g14580Os.17525.2.S1_x_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14580Os.17525.1.S1_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14590Os.11951.1.S1_at11/117+8319955..8323354IAA-amino acid hydrolase 1, putative, expressed
LOC_Os07g14600Os.29093.1.S1_at10/117+8324948..8326748Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14610Os.11833.1.S1_at11/117+8332674..8334026Peptidase family M20/M25/M40 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31069.1.S1_at--127--2031Chr07:8310740..8310861 (25 bp)
ACTACATTCTCTGTGTATCTTTTTC
LOC_Os07g14570
OsAffx.31069.1.S1_at--1114--2071NONE
ACATTCTCTGTGTATCTTTTTCACA
NONE
OsAffx.31069.1.S1_at--784--111Chr07:8310735..8310856 (25 bp)
ATTCTCTGTGTATCTTTTTCACATC
LOC_Os07g14570
OsAffx.31069.1.S1_at--564--9511Chr07:8310733..8310854 (25 bp)
TCTCTGTGTATCTTTTTCACATCTT
LOC_Os07g14570
OsAffx.31069.1.S1_at--680--3891Chr07:8310730..8310750 (21 bp)
CTGTGTATCTTTTTCACATCTTTGT
LOC_Os07g14570
OsAffx.31069.1.S1_at--317--857Chr11:8107831..8108062 (25 bp)
ATGGAATCCAACAGGTCCTTCATCG
LOC_Os11g14450
OsAffx.31069.1.S1_at--562--8513Chr01:23591815..23592046 (25 bp)
TGGAATCCAACAGGTCCTTCATCGA
LOC_Os01g41080
OsAffx.31069.1.S1_at--1150--8194Chr01:23591816..23592047 (25 bp)
GGAATCCAACAGGTCCTTCATCGAT
LOC_Os01g41080
OsAffx.31069.1.S1_at--265--5271Chr07:8310445..8310663 (25 bp)
GAATCCAACAGGTCCTTCATCGATA
LOC_Os07g14570
OsAffx.31069.1.S1_at--566--3034Chr11:8107835..8108066 (25 bp)
AATCCAACAGGTCCTTCATCGATAT
LOC_Os11g14450
OsAffx.31069.1.S1_at--141--7551Chr07:8310035..8310189 (25 bp)
GTGGCCCTAGAACGGCTCTCCCTCT
LOC_Os07g14570
Target Sequence 
ACTACATTCTCTGTGTATCTTTTTCACATCTTTGTGAGGCCTACATTGGGGTAGAGCCGTTTCTTGACCTCTTTCGTTTC
TACTACGAGTTGCGTTGGATGGAATCCAACAGGTCCTTCATCGATATCATCGATGACCTCCGAGTACGAGGGTTGTCGGG
GTATGAAGTCGCTGCCGACTTCATTGGTTTGAACAGCGAAACCGTGGAGCGCCGCGTCGGTCAAGTGATGATCAGTGGCC
CTAGAACGGCTCTCCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis