Browse Element(s) Details


Os.29093.1.S1_at

Description gb:AK110647.1
DB_XREF= gi:32995856
TID=Os.29093.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative IAA amidohydrolase (P0021G06.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-D08, full insert sequence.
FL= gb:AK110647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1460010/11Peptidase family M20/M25/M40 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14560OsAffx.21161.1.S1_at1/117+8301301..8305674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14570OsAffx.31069.1.S1_x_at10/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.4.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.1.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_at5/117+8306602..8311006hypothetical protein
LOC_Os07g14570Os.53479.1.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.14745.1.S1_at2/117+8306602..8311006hypothetical protein
LOC_Os07g14580Os.17525.2.S1_x_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14580Os.17525.1.S1_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14590Os.11951.1.S1_at11/117+8319955..8323354IAA-amino acid hydrolase 1, putative, expressed
LOC_Os07g14600Os.29093.1.S1_at10/117+8324948..8326748Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14610Os.11833.1.S1_at11/117+8332674..8334026Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14620NANA7+8339576..8339776hypothetical protein
LOC_Os07g14630OsAffx.28446.1.S1_at11/117+8346024..8347734UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g14640OsAffx.16264.1.S1_at8/117+8348554..8349231hypothetical protein
LOC_Os07g14650Os.25866.1.S1_x_at11/117+8350388..8353151expressed protein
LOC_Os07g14650Os.25866.2.S1_at11/117+8350388..8353151expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009850biological_processauxin metabolism
GO:0008237molecular_functionmetallopeptidase activity
GO:0010178molecular_functionIAA-amino acid conjugate hydrolase activity
GO:0010179molecular_functionIAA-Ala conjugate hydrolase activity
GO:0010210molecular_functionIAA-Phe conjugate hydrolase activity
GO:0010211molecular_functionIAA-Leu conjugate hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29093.1.S1_at--1073--1851Chr07:8325426..8325450 (25 bp)
ACGACGGGATGTACGGCCACGCCAA
LOC_Os07g14600
Os.29093.1.S1_at--84--6991Chr07:8325161..8325185 (25 bp)
GTACCTGAACAAGCACGACTGCTCG
LOC_Os07g14600
Os.29093.1.S1_at--239--5731Chr07:8325145..8325169 (25 bp)
GACTGCTCGTGAATCTCGTGTGTGA
LOC_Os07g14600
Os.29093.1.S1_at--591--5251Chr07:8325135..8325159 (25 bp)
GAATCTCGTGTGTGATCCAATTGAA
LOC_Os07g14600
Os.29093.1.S1_at--101--311Chr07:8325108..8325132 (25 bp)
ATACTTCGTATCAAGCAATCGATCG
LOC_Os07g14600
Os.29093.1.S1_at--454--5192Chr07:2481182..2481201 (20 bp)
GCAATCGATCGACCTGTGGTGAAAA
NONE
Os.29093.1.S1_at--742--6071Chr07:8325052..8325076 (25 bp)
GAGTATTTGTCATAGCTTGCTGGCT
LOC_Os07g14600
Os.29093.1.S1_at--181--4931Chr07:8325038..8325062 (25 bp)
GCTTGCTGGCTAGTGAATACTATGT
LOC_Os07g14600
Os.29093.1.S1_at--577--2031Chr07:8325020..8325044 (25 bp)
ACTATGTGTGTGATTTATTACGGTA
LOC_Os07g14600
Os.29093.1.S1_at--240--151Chr07:8325004..8325028 (25 bp)
ATTACGGTATGTGATAGTTTGGGCA
LOC_Os07g14600
Os.29093.1.S1_at--409--10491NONE
TTAATCAATTTGCAACCGAGTACGT
NONE
Target Sequence 
ACGACGGGATGTACGGCCACGCCAAGGCGGTGGCGGAGGCGATGCTCGGCGAGGCCAACGTGAGGGTCGCCGCCCGGAGC
ATGGGCGGCGAGGACTTCGCCTTCTACGCGCGGCGGTCGCCGGGGGCCTTCTTCTTCATCGGCGTCGGCAACGAGACCAC
CATGGGGCCCGCCGCCGCCGTCCGGCCGGTGCACTCGCCGCACTTCGTCCTCGACGAGCGCGCGCTGCCGGTCGGGGCGG
CGCTCCACGCCGCCGTCGCGATCGAGTACCTGAACAAGCACGACTGCTCGTGAATCTCGTGTGTGATCCAATTGAAATAT
ACTTCGTATCAAGCAATCGATCGACCTGTGGTGAAAATAATTAGAAAAAGAAATGAGTATTTGTCATAGCTTGCTGGCTA
GTGAATACTATGTGTGTGATTTATTACGGTATGTGATAGTTTGGGCATTTTATATTGAATAAATTTTGCTGGCATAAATT
AATCAATTTGCAACCGAGTACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis