Browse Element(s) Details


Os.11833.1.S1_at

Description gb:AK110676.1
DB_XREF= gi:32995885
TID=Os.11833.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) IAA amidohydrolase-like protein~contains ESTs AU057861(S21852),AU162711(S20809) (P0021G06.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-G10, full insert sequence.
FL= gb:AK110676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1461011/11Peptidase family M20/M25/M40 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14570OsAffx.31069.1.S1_x_at10/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.4.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.1.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_at5/117+8306602..8311006hypothetical protein
LOC_Os07g14570Os.53479.1.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.14745.1.S1_at2/117+8306602..8311006hypothetical protein
LOC_Os07g14580Os.17525.2.S1_x_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14580Os.17525.1.S1_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14590Os.11951.1.S1_at11/117+8319955..8323354IAA-amino acid hydrolase 1, putative, expressed
LOC_Os07g14600Os.29093.1.S1_at10/117+8324948..8326748Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14610Os.11833.1.S1_at11/117+8332674..8334026Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14620NANA7+8339576..8339776hypothetical protein
LOC_Os07g14630OsAffx.28446.1.S1_at11/117+8346024..8347734UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g14640OsAffx.16264.1.S1_at8/117+8348554..8349231hypothetical protein
LOC_Os07g14650Os.25866.1.S1_x_at11/117+8350388..8353151expressed protein
LOC_Os07g14650Os.25866.2.S1_at11/117+8350388..8353151expressed protein
LOC_Os07g14660OsAffx.22756.1.S1_s_at11/117+8356892..8357509Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009850biological_processauxin metabolism
GO:0008237molecular_functionmetallopeptidase activity
GO:0010178molecular_functionIAA-amino acid conjugate hydrolase activity
GO:0010179molecular_functionIAA-Ala conjugate hydrolase activity
GO:0010210molecular_functionIAA-Phe conjugate hydrolase activity
GO:0010211molecular_functionIAA-Leu conjugate hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11833.1.S1_at--487--4011Chr07:8333179..8333203 (25 bp)
CGTCCGCGTGGCACCGCAGCTGATG
LOC_Os07g14610
Os.11833.1.S1_at--145--2731Chr07:8332965..8332989 (25 bp)
AAGCACGCGTCGTCCATGTGAAGAA
LOC_Os07g14610
Os.11833.1.S1_at--461--411Chr07:8332934..8332958 (25 bp)
ATCAGTGTGTGCTTGTGCATGCATG
LOC_Os07g14610
Os.11833.1.S1_at--564--3611Chr07:8332923..8332947 (25 bp)
CTTGTGCATGCATGTGCGTGAGGCA
LOC_Os07g14610
Os.11833.1.S1_at--575--9131Chr07:8332909..8332933 (25 bp)
TGCGTGAGGCAAAGAAGTATCGTTT
LOC_Os07g14610
Os.11833.1.S1_at--256--6911Chr07:8332893..8332917 (25 bp)
GTATCGTTTGGTGGTCATAGGTACA
LOC_Os07g14610
Os.11833.1.S1_at--957--6151Chr07:8332859..8332883 (25 bp)
GAGGATACGTAGCATGCGTACACAT
LOC_Os07g14610
Os.11833.1.S1_at--850--9131Chr07:8332845..8332869 (25 bp)
TGCGTACACATTCTCGCCATACATA
LOC_Os07g14610
Os.11833.1.S1_at--330--9511Chr07:8332834..8332858 (25 bp)
TCTCGCCATACATAGGGCATGTGCT
LOC_Os07g14610
Os.11833.1.S1_at--763--7591Chr07:8332820..8332844 (25 bp)
GGGCATGTGCTATATTTTAGTGCAA
LOC_Os07g14610
Os.11833.1.S1_at--808--2191Chr07:8332709..8332733 (25 bp)
ACAACCGCGGATTTCCAGAATACTT
LOC_Os07g14610
Target Sequence 
CGTCCGCGTGGCACCGCAGCTGATGGGCGCCGAGGACTTCGGGTTCTACGCGGCGCGGATGCCCAGCGCCTTCTTCACCA
TCGGCGTCGGCAACGCCACCACCAGCAGCGCCCGGGCGGCGCACACCACGCACTCCCCGCACTTCGTCATCGACGAGGCC
GCACTCCCCGTCGGCGCCGCGGTCCACGCCGCCGTCGCCATCGACTACCTCTCCAAGCACGCGTCGTCCATGTGAAGAAT
TAAGGATCAGTGTGTGCTTGTGCATGCATGTGCGTGAGGCAAAGAAGTATCGTTTGGTGGTCATAGGTACAGTATGTGTA
GAGGATACGTAGCATGCGTACACATTCTCGCCATACATAGGGCATGTGCTATATTTTAGTGCAAAAATTCTATTGTTTCT
CAAAATATAGGTTAAATGAGATATAAAATACCTCGTTAAGTTTACGAAGGACCTCAATATAGAGGAGACGACAACCGCGG
ATTTCCAGAATACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis