Browse Element(s) Details


Os.17525.2.S1_x_at

Description gb:NM_186846.1
DB_XREF= gi:34900777
GEN=P0021G06.13
TID=Os.17525.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) transcription factor-like protein (P0021G06.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) transcription factor-like protein (P0021G06.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1458011/11Dcp1-like decapping family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14549NANA7+8291920..8292728NA
LOC_Os07g14560OsAffx.21161.1.S1_at1/117+8301301..8305674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14570OsAffx.31069.1.S1_x_at10/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.4.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.1.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_at5/117+8306602..8311006hypothetical protein
LOC_Os07g14570Os.53479.1.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.14745.1.S1_at2/117+8306602..8311006hypothetical protein
LOC_Os07g14580Os.17525.2.S1_x_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14580Os.17525.1.S1_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14590Os.11951.1.S1_at11/117+8319955..8323354IAA-amino acid hydrolase 1, putative, expressed
LOC_Os07g14600Os.29093.1.S1_at10/117+8324948..8326748Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14610Os.11833.1.S1_at11/117+8332674..8334026Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14620NANA7+8339576..8339776hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17525.2.S1_x_at--272--1811Chr07:8318371..8318395 (25 bp)
ACCCATGTCCAGGAGGATCCGTTAT
LOC_Os07g14580
Os.17525.2.S1_x_at--741--6371Chr07:8318386..8318410 (25 bp)
GATCCGTTATCTGCATTCTTCAGTG
LOC_Os07g14580
Os.17525.2.S1_x_at--363--3451Chr07:8318601..8318625 (25 bp)
CAGTGCCTCTGGTTTATCAGTTGCA
LOC_Os07g14580
Os.17525.2.S1_x_at--881--10851Chr07:8318645..8318669 (25 bp)
TTGGATCTACTCCTTTATCTTCACA
LOC_Os07g14580
Os.17525.2.S1_x_at--862--2831Chr07:8318679..8318703 (25 bp)
AAGTATCAGTATATCTCAGCCTCCA
LOC_Os07g14580
Os.17525.2.S1_x_at--856--7071Chr07:8318740..8318764 (25 bp)
GTAATATCCCCTGATGTTCATGGTG
LOC_Os07g14580
Os.17525.2.S1_x_at--649--7111Chr07:8318787..8318811 (25 bp)
GTCAGCAAGCCTTCTAAATCCATCA
LOC_Os07g14580
Os.17525.2.S1_x_at--668--2271Chr07:8318802..8318826 (25 bp)
AAATCCATCACTTTTTTCACCATTG
LOC_Os07g14580
Os.17525.2.S1_x_at--881--9671Chr07:8318818..8318842 (25 bp)
TCACCATTGACATCTTCTCAGACAA
LOC_Os07g14580
Os.17525.2.S1_x_at--807--11Chr07:8318967..8318991 (25 bp)
ATATGGGACTCCGTTACTTCAACCA
LOC_Os07g14580
Os.17525.2.S1_x_at--357--7031Chr07:8319036..8319060 (25 bp)
GTACAGCCCAGTACTGTCCAGAGAA
LOC_Os07g14580
Target Sequence 
ACCCATGTCCAGGAGGATCCGTTATCTGCATTCTTCAGTGGAGCTATAAATGTTGGCAGTGCCTCTGGTTTATCAGTTGC
AGGACAGTTAAATCAATCTTTTGGATCTACTCCTTTATCTTCACATGCACCAACAAGTATCAGTATATCTCAGCCTCCAG
CTGTGCACCATTTGCTCCCTTCTCAAACTTCATCAGTAATATCCCCTGATGTTCATGGTGGAACTGGTGCTGTGGTCAAC
AGGTCAGCAAGCCTTCTAAATCCATCACTTTTTTCACCATTGACATCTTCTCAGACAACAATGGCCCGCACCAATCCTGT
GGCACCTACTGCTCCACCTCAACATCCTCGCATCACTCAGCAACCACACAGTGCTCCCTTGCTTCAACCCTTTCCGTTAC
CTACAGCATCGCCTTCTCCACCATATGGGACTCCGTTACTTCAACCATTTCCGCCACCAAATCCATCCCCATCTCTTGCA
TCAGCACCGGTGTACAGCCCAGTACTGTCCAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17525.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis