Browse Element(s) Details


Os.17525.1.S1_at

Description gb:AK067442.1
DB_XREF= gi:32977460
TID=Os.17525.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) transcription factor-like protein (P0021G06.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100P19, full insert sequence.
FL= gb:AK067442.1 gb:AK104695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1458011/11Dcp1-like decapping family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14549NANA7+8291920..8292728NA
LOC_Os07g14560OsAffx.21161.1.S1_at1/117+8301301..8305674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14570OsAffx.31069.1.S1_x_at10/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.4.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.1.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_at5/117+8306602..8311006hypothetical protein
LOC_Os07g14570Os.53479.1.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.14745.1.S1_at2/117+8306602..8311006hypothetical protein
LOC_Os07g14580Os.17525.2.S1_x_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14580Os.17525.1.S1_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14590Os.11951.1.S1_at11/117+8319955..8323354IAA-amino acid hydrolase 1, putative, expressed
LOC_Os07g14600Os.29093.1.S1_at10/117+8324948..8326748Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14610Os.11833.1.S1_at11/117+8332674..8334026Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14620NANA7+8339576..8339776hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17525.1.S1_at--1148--431Chr07:8319504..8319528 (25 bp)
ATCTTTCGTCAGCTATTCAAGTTGC
LOC_Os07g14580
Os.17525.1.S1_at--122--3231Chr07:8319521..8319545 (25 bp)
CAAGTTGCAGGACATGCTACTGTAT
LOC_Os07g14580
Os.17525.1.S1_at--72--9091Chr07:8319535..8319559 (25 bp)
TGCTACTGTATATTTGTTGGTGTAA
LOC_Os07g14580
Os.17525.1.S1_at--1051--8811Chr07:8319549..8319573 (25 bp)
TGTTGGTGTAAGTCCATAGGTGCAC
LOC_Os07g14580
Os.17525.1.S1_at--1027--271Chr07:8319564..8319588 (25 bp)
ATAGGTGCACCATCCTCCATTGGCG
LOC_Os07g14580
Os.17525.1.S1_at--928--9231Chr07:8319579..8319603 (25 bp)
TCCATTGGCGGAGTTTGTATTTAAG
LOC_Os07g14580
Os.17525.1.S1_at--583--9971Chr07:8319604..8319628 (25 bp)
TACCATTTTCATATCTGTAAAGACG
LOC_Os07g14580
Os.17525.1.S1_at--606--3851Chr07:8319631..8319655 (25 bp)
CTGAATCTATCTGCACGTTGGAATA
LOC_Os07g14580
Os.17525.1.S1_at--966--10111Chr07:8319657..8319681 (25 bp)
TATGTGTTGTATATCCTTGGTGCAG
LOC_Os07g14580
Os.17525.1.S1_at--505--4791Chr07:8319691..8319715 (25 bp)
GCTCCATACATATCTGAAATCTTTG
LOC_Os07g14580
Os.17525.1.S1_at--49--2271Chr07:8319707..8319731 (25 bp)
AAATCTTTGGTTTTGGTCGCATGCG
LOC_Os07g14580
Target Sequence 
ATCTTTCGTCAGCTATTCAAGTTGCAGGACATGCTACTGTATATTTGTTGGTGTAAGTCCATAGGTGCACCATCCTCCAT
TGGCGGAGTTTGTATTTAAGTACCATTTTCATATCTGTAAAGACGAACTGAATCTATCTGCACGTTGGAATATTATGTGT
TGTATATCCTTGGTGCAGAAAAGTTTTGCTCCATACATATCTGAAATCTTTGGTTTTGGTCGCATGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis