Browse Element(s) Details


Os.11951.1.S1_at

Description gb:AU057170
DB_XREF= gi:4716054
DB_XREF=AU057170
CLONE=S21217_2Z
TID=Os.11951.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.11951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative IAA amidohydrolase (P0021G06.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1459011/11IAA-amino acid hydrolase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14560OsAffx.21161.1.S1_at1/117+8301301..8305674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14570OsAffx.31069.1.S1_x_at10/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.4.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.1.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_at5/117+8306602..8311006hypothetical protein
LOC_Os07g14570Os.53479.1.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.14745.1.S1_at2/117+8306602..8311006hypothetical protein
LOC_Os07g14580Os.17525.2.S1_x_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14580Os.17525.1.S1_at11/117+8314636..8319731Dcp1-like decapping family protein, expressed
LOC_Os07g14590Os.11951.1.S1_at11/117+8319955..8323354IAA-amino acid hydrolase 1, putative, expressed
LOC_Os07g14600Os.29093.1.S1_at10/117+8324948..8326748Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14610Os.11833.1.S1_at11/117+8332674..8334026Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14620NANA7+8339576..8339776hypothetical protein
LOC_Os07g14630OsAffx.28446.1.S1_at11/117+8346024..8347734UDP-glucoronosyl and UDP-glucosyl transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009850biological_processauxin metabolism
GO:0008237molecular_functionmetallopeptidase activity
GO:0010178molecular_functionIAA-amino acid conjugate hydrolase activity
GO:0010179molecular_functionIAA-Ala conjugate hydrolase activity
GO:0010210molecular_functionIAA-Phe conjugate hydrolase activity
GO:0010211molecular_functionIAA-Leu conjugate hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11951.1.S1_at--896--2331Chr07:8320527..8320547 (21 bp)
AAAGAGATCGTCGAAGCGCACGCGA
LOC_Os07g14590
Os.11951.1.S1_at--108--1851Chr07:8320430..8320454 (25 bp)
ACGAAGGGATGTACCGCCACGCCAG
LOC_Os07g14590
Os.11951.1.S1_at--326--7071Chr07:8320371..8320395 (25 bp)
GTCAAGGTGGGCACCCCGTTCATGG
LOC_Os07g14590
Os.11951.1.S1_at--484--9451Chr07:8320286..8320310 (25 bp)
TCGGCAACGAGACGACCATGCGGAA
LOC_Os07g14590
Os.11951.1.S1_at--89--611Chr07:8320269..8320293 (25 bp)
ATGCGGAAGGTGTACCCGCTGCACT
LOC_Os07g14590
Os.11951.1.S1_at--702--4011Chr07:8320231..8320255 (25 bp)
CGTCGACGAGGATGTGCTTCCGGTA
LOC_Os07g14590
Os.11951.1.S1_at--30--7251Chr07:8320185..8320209 (25 bp)
GTCGCCATGGAGTACTTGAACAAGC
LOC_Os07g14590
Os.11951.1.S1_at--873--2711Chr07:8320164..8320188 (25 bp)
AAGCACGCATTTACGGCTACGTTCT
LOC_Os07g14590
Os.11951.1.S1_at--436--2951Chr07:8320139..8320163 (25 bp)
AAGGCCTCCTTTTCATGTAAACATG
LOC_Os07g14590
Os.11951.1.S1_at--735--2911Chr07:8320040..8320064 (25 bp)
AAGGAGGCCTAAGTCTTTCAGTGGC
LOC_Os07g14590
Os.11951.1.S1_at--1084--7511Chr07:8320020..8320044 (25 bp)
GTGGCTTTTGAAATACTCGTGTTTT
LOC_Os07g14590
Target Sequence 
AAAGAGATCGTCGAAGCGCACGCGACCGTGCACCGGTGCACCGCCACCGTCGACTTCATGGAGGAGGAACGCATCCCGTA
CCCGGCCACCGTGAACGACGAAGGGATGTACCGCCACGCCAGGGCCGTGGCCGTGGACGTGCTCGGGGAAGACGGCGTCA
AGGTGGGCACCCCGTTCATGGGCNGCGAGGACTTCGCCTTCTACGCGCAGAGGTTCCCGGCGGCGTTCTTCATGATCGGC
GTCGGCAACGAGACGACCATGCGGAAGGTGTACCCGCTGCACTCCCCACACTTCGTCGTCGACGAGGATGTGCTTCCGGT
AGGAGCCGCCTTGCACGCGGCCGTCGCCATGGAGTACTTGAACAAGCACGCATTTACGGCTACGTTCTAAGGCCTCCTTT
TCATGTAAACATGGGGATTTCATATGAATTTCACAGAAAATGGTGTAAGTTCTTGTAAAAAAAAACATGGGAATTTTGTG
TGTTCCAAAGGAGGCCTAAGTCTTTCAGTGGCTTTTGAAATACTCGTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis