Browse Element(s) Details


OsAffx.31069.5.S1_at

Description tigr:9631.m03248
TID=OsAffx.31069.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3311011/11hypothetical protein
LOC_Os04g257705/11hypothetical protein
LOC_Os02g169905/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g145705/11hypothetical protein
LOC_Os03g374115/11MATE efflux family protein, expressed
LOC_Os01g486505/11expressed protein
LOC_Os02g432705/11retrotransposon protein, putative, unclassified
LOC_Os12g255005/11transposon protein, putative, unclassified
LOC_Os12g242105/11retrotransposon protein, putative, unclassified
LOC_Os03g291003/11retrotransposon protein, putative, unclassified
LOC_Os07g289802/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g33070NANA3+18877363..18878008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g33074NANA3+18880611..18880893hypothetical protein
LOC_Os03g33080OsAffx.22421.1.S1_at3/113+18881397..18884091transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g33090Os.53259.1.A1_at11/113+18890072..18891221LOB domain protein 37, putative, expressed
LOC_Os03g33100OsAffx.8864.1.S1_at8/113+18892422..18898625retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g33100Os.46273.1.S1_at2/113+18892422..18898625retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g33110OsAffx.31069.5.S1_x_at11/113+18902987..18905006hypothetical protein
LOC_Os03g33110OsAffx.31069.5.S1_at11/113+18902987..18905006hypothetical protein
LOC_Os03g33120OsAffx.10632.1.S1_at1/113+18905246..18906333retrotransposon protein, putative, unclassified
LOC_Os03g33130NANA3+18908112..18911229retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33140NANA3+18912444..18915994retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33150NANA3+18916748..18916996transposon protein, putative, unclassified
LOC_Os03g33160NANA3+18920998..18924319retrotransposon protein, putative, unclassified
LOC_Os03g33165Os.45721.1.S1_x_at2/113+18925669..18926969retrotransposon protein, putative, unclassified
LOC_Os03g33172NANA3+18928792..18930225retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31069.5.S1_at--870--2531Chr03:18904413..18904437 (25 bp)
AACTCTAGCGCGTCTCCGGCCGTGG
LOC_Os03g33110
OsAffx.31069.5.S1_at--619--8391Chr03:18904664..18904688 (25 bp)
GGCGCATGACTTGACGGAGGTTCGT
LOC_Os03g33110
OsAffx.31069.5.S1_at--389--3511Chr03:18904668..18904692 (25 bp)
CATGACTTGACGGAGGTTCGTGAGG
LOC_Os03g33110
OsAffx.31069.5.S1_at--307--611Chr03:18904942..18904966 (25 bp)
ATGCGGCCAGGATCTTACATGGTCT
LOC_Os03g33110
OsAffx.31069.5.S1_at--409--4711Chr03:18904944..18904968 (25 bp)
GCGGCCAGGATCTTACATGGTCTTT
LOC_Os03g33110
OsAffx.31069.5.S1_at--1081--8433Chr09:5822086..5822351 (25 bp)
GGCCAGGATCTTACATGGTCTTTCG
NONE
OsAffx.31069.5.S1_at--260--441148Chr12:22117435..22117454 (20 bp)
GCCAGGATCTTACATGGTCTTTCGT
NONE
OsAffx.31069.5.S1_at--842--345157Chr12:22117435..22117456 (22 bp)
CAGGATCTTACATGGTCTTTCGTCT
NONE
OsAffx.31069.5.S1_at--1065--99176Chr12:22117435..22117457 (23 bp)
AGGATCTTACATGGTCTTTCGTCTC
NONE
OsAffx.31069.5.S1_at--1065--795175Chr12:22117435..22117458 (24 bp)
GGATCTTACATGGTCTTTCGTCTCT
NONE
OsAffx.31069.5.S1_at--318--643154Chr12:2269439..2269463 (25 bp)
GATCTTACATGGTCTTTCGTCTCTA
NONE
Target Sequence 
AACTCTAGCGCGTCTCCGGCCGTGGCCTCGACAGATGTCGTGGTCGTGCCCAGGAGCCGTGAGGCGACGCCCAGCGGCCC
TGTCGGCGATCTTGCGCCTGCTCGAGGCCCTCCTGCTGACGTCCTCACCTGGGAGGAGCTCCAAGTCGAGATGGGGCGCC
TCCTCCAGGCCGGCGCTCGCGGCATAGTTCGCGAGATAGCGGAGGCGAGGGCGGCGGCAGCGTCGTCGGTGAACAAACGC
GCCGACAAGCTGGCGCATGACTTGACGGAGGTTCGTGAGGACCTCCAGAAAATGAAGGAGCTGGTGGCCGGCAACGAGCG
GCAATGGCAGGGGCTCAAGAACCGCATGTCGGAACTCGAGAACAACCTGTCGGAAATCCGCGGTTCGCTGTGGGTCACCT
ACACCGGCCTACACCAGCTCGTCGGGGAGTGTGGTGTTAAGACCACCATCCCGGCGAACCCTGACGAGTTCTCGCTGACG
GCTTCGCTCGCGGAGCTGGCGACGGCGATGGAGGCGATCCCCTCCAAGCATGCGGCCAGGATCTTACATGGTCTTTCGTC
TCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31069.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis