Browse Element(s) Details


OsAffx.22421.1.S1_at

Description gb:NM_187036.1
DB_XREF= gi:34901157
GEN=P0030H06.7
TID=OsAffx.22421.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) transposase-like protein (P0030H06.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2647011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g355204/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g141804/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g203904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g174904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g320904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g304503/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g185103/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g260903/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g116603/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g330803/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g181303/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g394202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g204902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g263202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g161402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g353701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g240201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g228101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g117801/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26440Os.8688.2.S1_at11/117+15202398..15209777expressed protein
LOC_Os07g26440Os.8688.1.S1_a_at11/117+15202398..15209777expressed protein
LOC_Os07g26440OsAffx.988.1.S1_at1/117+15202398..15209777expressed protein
LOC_Os07g26450NANA7+15212928..15213269hypothetical protein
LOC_Os07g26460OsAffx.5450.1.S1_at11/117+15219787..15221316ABL064Wp, putative
LOC_Os07g26470OsAffx.22421.1.S1_at11/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26470OsAffx.22421.4.S1_x_at2/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26470Os.26886.3.S1_x_at1/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26480Os.9667.1.S1_at11/117+15229271..15231589P21-Rho-binding domain containing protein, expressed
LOC_Os07g26490Os.10124.3.S1_x_at11/117+15235473..15241349expressed protein
LOC_Os07g26500OsAffx.28600.1.S1_at11/117+15243075..15243390hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22421.1.S1_at--706--1571Chr07:15224575..15224599 (25 bp)
AGCTCAAAGGCTTTGCTGCCGACCC
LOC_Os07g26470
OsAffx.22421.1.S1_at--1122--6711Chr12:19329248..19329271 (24 bp)
ATGACATCGATGTGTTCTTGGAGCT
LOC_Os12g32090
OsAffx.22421.1.S1_at--305--3611Chr07:15224358..15224382 (25 bp)
CTTGGAGCTTGTTATCTATGACCTT
LOC_Os07g26470
OsAffx.22421.1.S1_at--798--6791Chr07:15224348..15224372 (25 bp)
GTTATCTATGACCTTGAGATTCTGT
LOC_Os07g26470
OsAffx.22421.1.S1_at--12--7811Chr07:15224291..15224315 (25 bp)
GGTCAGAAGAACTTCACACTACGAG
LOC_Os07g26470
OsAffx.22421.1.S1_at--242--10517Chr11:20323051..20323075 (25 bp)
TTCACACTACGAGTTCTATTGTTCT
LOC_Os11g35520
OsAffx.22421.1.S1_at--326--50914Chr12:19329368..19329392 (25 bp)
GCACCATTAATGATTATCCCGCGCT
LOC_Os12g32090
OsAffx.22421.1.S1_at--651--1312Chr12:19329373..19329609 (25 bp)
ATTAATGATTATCCCGCGCTAGGTA
LOC_Os12g32090
OsAffx.22421.1.S1_at--1045--4211Chr07:15224236..15224260 (25 bp)
CCGCGCTAGGTAATCTTTCTGGACA
LOC_Os07g26470
OsAffx.22421.1.S1_at--286--993Chr12:21473441..21473464 (24 bp)
AGGTAATCTTTCTGGACAAACCATG
LOC_Os12g35370
OsAffx.22421.1.S1_at--509--54912Chr12:19329448..19329472 (25 bp)
GAACATACACGCAGTAGGTGGCTGA
LOC_Os12g32090
Target Sequence 
AGCTCAAAGGCTTTGCTGCCGACCCCAGAAACATGAGGATATGTTTGTGTACGGATGGCATGAATCCTTTCGGAGACATG
AGCAGTTCTCACAGCACTTGGCCAGTTCTTATTGCGAACTATAACCTCCCGCCATGGTTGTGCTTCAAAAGGAAATATAT
TATATTGTGCTTGTTAATCCAAGGTCTGAGACAACCCGGCAATGACATCGATGTGTTCTTGGAGCTTGTTATCTATGACC
TTGAGATTCTGTGGAAAGAGGGTGTGGAAACTTGGGATTCATATGGTCAGAAGAACTTCACACTACGAGTTCTATTGTTC
TGCACCATTAATGATTATCCCGCGCTAGGTAATCTTTCTGGACAAACCATGAAAAGAAAGAAGGCATGCTCTGACTGTAT
GGAACATACACGCAGTAGGTGGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis