Browse Element(s) Details


Os.9667.1.S1_at

Description gb:AK099317.1
DB_XREF= gi:32984526
TID=Os.9667.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C73185(E3333)~unknown protein (P0030H06.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144B01, full insert sequence.
FL= gb:AK099317.1 gb:AK072251.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2648011/11P21-Rho-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26440Os.8688.2.S1_at11/117+15202398..15209777expressed protein
LOC_Os07g26440Os.8688.1.S1_a_at11/117+15202398..15209777expressed protein
LOC_Os07g26440OsAffx.988.1.S1_at1/117+15202398..15209777expressed protein
LOC_Os07g26450NANA7+15212928..15213269hypothetical protein
LOC_Os07g26460OsAffx.5450.1.S1_at11/117+15219787..15221316ABL064Wp, putative
LOC_Os07g26470OsAffx.22421.1.S1_at11/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26470OsAffx.22421.4.S1_x_at2/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26470Os.26886.3.S1_x_at1/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26480Os.9667.1.S1_at11/117+15229271..15231589P21-Rho-binding domain containing protein, expressed
LOC_Os07g26490Os.10124.3.S1_x_at11/117+15235473..15241349expressed protein
LOC_Os07g26500OsAffx.28600.1.S1_at11/117+15243075..15243390hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000902biological_processcellular morphogenesis
GO:0007204biological_processelevation of cytosolic calcium ion concentration
GO:0009860biological_processpollen tube growth
GO:0010215biological_processcellulose microfibril organization
GO:0030834biological_processregulation of actin filament depolymerization
GO:0031122biological_processcytoplasmic microtubule organization and biogenesis
GO:0050848biological_processregulation of calcium-mediated signaling
GO:0050850biological_processpositive regulation of calcium-mediated signaling
GO:0005737cellular_componentcytoplasm
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0016324cellular_componentapical plasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9667.1.S1_at--879--5611Chr07:15231209..15231233 (25 bp)
GACACGAACACGAACTTCTTTCGGG
LOC_Os07g26480
Os.9667.1.S1_at--778--2511Chr07:15231254..15231278 (25 bp)
AACTAAAGCTTGTCACGTCACGCTC
LOC_Os07g26480
Os.9667.1.S1_at--185--9291Chr07:15231277..15231301 (25 bp)
TCCGGATTTGCTTCGAGCGAGCTCG
LOC_Os07g26480
Os.9667.1.S1_at--94--10291Chr07:15231327..15231351 (25 bp)
TTTGCTCGATCATGCATGGCGACGT
LOC_Os07g26480
Os.9667.1.S1_at--472--8691Chr07:15231371..15231395 (25 bp)
TGTGCACGCCCTAATTCAAACTGAT
LOC_Os07g26480
Os.9667.1.S1_at--423--2391Chr07:15231388..15231412 (25 bp)
AAACTGATCCTTTCCTCTCAATTTT
LOC_Os07g26480
Os.9667.1.S1_at--591--3771Chr07:15231429..15231453 (25 bp)
CTCTCTCTCCCTACTGTAATACTAT
LOC_Os07g26480
Os.9667.1.S1_at--258--271Chr07:15231473..15231497 (25 bp)
ATATGTGTTGTGTTGTTCCTGACTC
LOC_Os07g26480
Os.9667.1.S1_at--800--7411Chr07:15231482..15231506 (25 bp)
GTGTTGTTCCTGACTCACATATATA
LOC_Os07g26480
Os.9667.1.S1_at--24--8751Chr07:15231527..15231551 (25 bp)
TGTACGTTTTGTATAACCGCGGTGA
LOC_Os07g26480
Os.9667.1.S1_at--442--5591Chr07:15231562..15231586 (25 bp)
GAAATTTAATGGATCCCTCTTGAGT
LOC_Os07g26480
Target Sequence 
GACACGAACACGAACTTCTTTCGGGAGACGAAATCGATGAAACTAAACTAAAGCTTGTCACGTCACGCTCCGGATTTGCT
TCGAGCGAGCTCGGATTTAGATGGATGGGTATNTAGATTTTGCTCGATCATGCATGGCGACGTTCGAAGAAGAAACGGGG
TGTGTGCACGCCCTAATTCAAACTGATCCTTTCCTCTCAATTTTTTTTCCCTTTTTCTTTCTCTCTCTCCCTACTGTAAT
ACTATTTGATCGACATTTTGTTGAATATGTGTTGTGTTGTTCCTGACTCACATATATAAAGTGTACCAAGTGGGATTATG
TACGTTTTGTATAACCGCGGTGAAATATTCTGTGAAATTTAATGGATCCCTCTTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis