Browse Element(s) Details


OsAffx.5450.1.S1_at

Description tigr:9635.m02547
TID=OsAffx.5450.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2646011/11ABL064Wp, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26430OsAffx.28598.1.S1_x_at11/117+15190749..15198953NB-ARC domain containing protein
LOC_Os07g26430OsAffx.28598.2.S1_x_at10/117+15190749..15198953NB-ARC domain containing protein
LOC_Os07g26440Os.8688.2.S1_at11/117+15202398..15209777expressed protein
LOC_Os07g26440Os.8688.1.S1_a_at11/117+15202398..15209777expressed protein
LOC_Os07g26440OsAffx.988.1.S1_at1/117+15202398..15209777expressed protein
LOC_Os07g26450NANA7+15212928..15213269hypothetical protein
LOC_Os07g26460OsAffx.5450.1.S1_at11/117+15219787..15221316ABL064Wp, putative
LOC_Os07g26470OsAffx.22421.1.S1_at11/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26470OsAffx.22421.4.S1_x_at2/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26470Os.26886.3.S1_x_at1/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26480Os.9667.1.S1_at11/117+15229271..15231589P21-Rho-binding domain containing protein, expressed
LOC_Os07g26490Os.10124.3.S1_x_at11/117+15235473..15241349expressed protein
LOC_Os07g26500OsAffx.28600.1.S1_at11/117+15243075..15243390hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5450.1.S1_at--375--4071Chr07:15219860..15219884 (25 bp)
CGAAGCCGTTTCTTGAAGTTTGCAA
LOC_Os07g26460
OsAffx.5450.1.S1_at--570--2831Chr07:15219875..15219899 (25 bp)
AAGTTTGCAAGCACATTCTTCCTGT
LOC_Os07g26460
OsAffx.5450.1.S1_at--678--7971Chr07:15220000..15220024 (25 bp)
GGATCGGCTATGTCAATCGTGAAGA
LOC_Os07g26460
OsAffx.5450.1.S1_at--409--10131Chr07:15220249..15220273 (25 bp)
TATGCATCCGATCCTTCAAAGTATG
LOC_Os07g26460
OsAffx.5450.1.S1_at--667--9531Chr07:15220327..15220351 (25 bp)
TCTAGCAGTTGTACCAATGGCCTTT
LOC_Os07g26460
OsAffx.5450.1.S1_at--718--5611Chr07:15220450..15220470 (21 bp)
GACAAGAGCCATGGACTTCCTGGTT
LOC_Os07g26460
OsAffx.5450.1.S1_at--61--10671Chr07:15220462..15220486 (25 bp)
TTCCTGGTTGCACTGTTCCATAATT
LOC_Os07g26460
OsAffx.5450.1.S1_at--901--751Chr07:15220510..15220534 (25 bp)
ATGTCACAAGCTTGCAGCGATGCGT
LOC_Os07g26460
OsAffx.5450.1.S1_at--488--7991Chr07:15220561..15220585 (25 bp)
GGATGGCTGGCGAGTTCAAGCTTTT
LOC_Os07g26460
OsAffx.5450.1.S1_at--871--10691Chr07:15221058..15221082 (25 bp)
TTGCCATAAAGCTTGCTCCAGACAG
LOC_Os07g26460
OsAffx.5450.1.S1_at--534--5331Chr07:15221137..15221161 (25 bp)
GAAGTTTTGTGCAACTTTCTCCCCA
LOC_Os07g26460
Target Sequence 
CGAAGCCGTTTCTTGAAGTTTGCAAGCACATTCTTCCTGTGCTAGATAAGTTTGGATCGGCTATGTCAATCGTGAAGAAT
GACATTGGTGGTAATATTACGAGATTGGAGACAAAATATGCATCCGATCCTTCAAAGTATGAGCAGCTGCACAGCATGGT
GAAAGTTGAGATCAGCTCTAAGACAGCAAAAAGTTCTAGCAGTTGTACCAATGGCCTTTTGTGGTTGACAAGAGCCATGG
ACTTCCTGGTTGCACTGTTCCATAATTTGGTACAGCACCCAGATTGGCAAATGTCACAAGCTTGCAGCGATGCGTACAGT
AAAACTCTCAAGAAATGGCACGGATGGCTGGCGAGTTCAAGCTTTTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGC
CATAAAGCTTGCTCCAGACAGGAAGAAATTCATGGAGATCATTAGTGGCTCAGGTGATATCAACGCAGACATCGAGAAGT
TTTGTGCAACTTTCTCCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis