Browse Element(s) Details


OsAffx.28600.1.S1_at

Description tigr:9635.m02551
TID=OsAffx.28600.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2650011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26460OsAffx.5450.1.S1_at11/117+15219787..15221316ABL064Wp, putative
LOC_Os07g26470OsAffx.22421.1.S1_at11/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26470OsAffx.22421.4.S1_x_at2/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26470Os.26886.3.S1_x_at1/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26480Os.9667.1.S1_at11/117+15229271..15231589P21-Rho-binding domain containing protein, expressed
LOC_Os07g26490Os.10124.3.S1_x_at11/117+15235473..15241349expressed protein
LOC_Os07g26500OsAffx.28600.1.S1_at11/117+15243075..15243390hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28600.1.S1_at--75--1151Chr07:15243110..15243134 (25 bp)
AGTCCTCAGAGCTACGTCCCTCAAG
LOC_Os07g26500
OsAffx.28600.1.S1_at--891--9651Chr07:15243115..15243139 (25 bp)
TCAGAGCTACGTCCCTCAAGAGAGA
LOC_Os07g26500
OsAffx.28600.1.S1_at--672--711Chr07:15243275..15243299 (25 bp)
ATGATGCGGAGAAAGAGCGGCAAAA
LOC_Os07g26500
OsAffx.28600.1.S1_at--1036--3791Chr07:15243293..15243317 (25 bp)
GGCAAAAAGCGGAGAGGTACAAAGT
LOC_Os07g26500
OsAffx.28600.1.S1_at--1061--6011Chr07:15243304..15243328 (25 bp)
GAGAGGTACAAAGTTGCATTCGCAC
LOC_Os07g26500
OsAffx.28600.1.S1_at--808--6151Chr07:15243306..15243330 (25 bp)
GAGGTACAAAGTTGCATTCGCACTT
LOC_Os07g26500
OsAffx.28600.1.S1_at--816--7031Chr07:15243309..15243333 (25 bp)
GTACAAAGTTGCATTCGCACTTGAT
LOC_Os07g26500
OsAffx.28600.1.S1_at--241--6671Chr07:15243316..15243340 (25 bp)
GTTGCATTCGCACTTGATCAACAAT
LOC_Os07g26500
OsAffx.28600.1.S1_at--347--4951Chr07:15243319..15243343 (25 bp)
GCATTCGCACTTGATCAACAATGGA
LOC_Os07g26500
OsAffx.28600.1.S1_at--397--5111Chr07:15243325..15243349 (25 bp)
GCACTTGATCAACAATGGATTGGTT
LOC_Os07g26500
OsAffx.28600.1.S1_at--798--3271Chr07:15243334..15243358 (25 bp)
CAACAATGGATTGGTTTGGAGAAAG
LOC_Os07g26500
Target Sequence 
AGTCCTCAGAGCTACGTCCCTCAAGAGAGAATCATATTCCANNNAGGAAGAGGATGATGCGGAGAAAGAGCGGCAAAAAG
CGGAGAGGTACAAAGTTGCATTCGCACTTGATCAACAATGGATTGGTTTGGAGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis