Browse Element(s) Details


Os.46273.1.S1_at

Description gb:NM_194846.1
DB_XREF= gi:37531051
TID=Os.46273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46273 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative copia-type pol polyprotein (OSJNBb0016M10.4), mRNA.
PROD=putative copia-type pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0571011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g222304/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g365804/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g110903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g331002/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05690Os.51827.1.S1_x_at10/1110+2833808..2839957AUX1 protein, putative, expressed
LOC_Os10g05690OsAffx.7026.1.S1_x_at4/1110+2833808..2839957AUX1 protein, putative, expressed
LOC_Os10g05700OsAffx.8864.1.S1_at11/1110+2858350..2858901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05710Os.46273.1.S1_at11/1110+2860114..2866525retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05730Os.18851.2.A1_at11/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05730Os.18851.1.A1_at10/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05720OsAffx.30305.1.S1_at11/1110+2869612..2870662Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g05740OsAffx.6586.1.S1_at11/1110+2878546..2880179hypothetical protein
LOC_Os10g05750Os.8203.1.S1_at11/1110+2881765..2883207proline-rich protein, putative, expressed
LOC_Os10g05770OsAffx.20747.1.S1_at10/1110+2889282..2892519hypothetical protein
LOC_Os10g05770OsAffx.14013.2.S1_at2/1110+2889282..2892519hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46273.1.S1_at--1044--611Chr10:2866023..2866047 (25 bp)
ATGCTGGCTATATGTCGAATCCTCG
LOC_Os10g05710
Os.46273.1.S1_at--544--5251Chr10:2866039..2866063 (25 bp)
GAATCCTCGTAATGCCAGATCTCAG
LOC_Os10g05710
Os.46273.1.S1_at--806--4411Chr10:2866052..2866076 (25 bp)
GCCAGATCTCAGACTAGGTTTGTAT
LOC_Os10g05710
Os.46273.1.S1_at--601--9751Chr10:2866087..2866111 (25 bp)
TAATACTGCCATTTCCTGGCGGTTT
LOC_Os10g05710
Os.46273.1.S1_at--666--2333Chr10:2866114..2866138 (25 bp)
AAAGCAGACCCTGGTTGCAACGTCA
LOC_Os10g05710
Os.46273.1.S1_at--526--9096Chr10:2866159..2866183 (25 bp)
TGCTCTATATGAGGCCACACGAGAA
LOC_Os10g05710
Os.46273.1.S1_at--1141--8291Chr10:2866191..2866215 (25 bp)
GGCTTATGCGGATGATCGGTCACAT
LOC_Os10g05710
Os.46273.1.S1_at--502--2095Chr10:2866212..2866236 (25 bp)
ACATCCAGAAGTCATGTGGCCTAAA
LOC_Os10g05710
Os.46273.1.S1_at--670--10353Chr10:2866347..2866371 (25 bp)
TTTATCCCCATGAGCTCCAGAAGAG
LOC_Os10g05710
Os.46273.1.S1_at--118--2853Chr10:2866430..2866454 (25 bp)
AAGTCTCTGCCAGCATCAAGTTTTC
LOC_Os10g05710
Os.46273.1.S1_at--1040--8672Chr10:2866460..2866484 (25 bp)
TGTGTTCGTGGCATCGGCATGAGAC
LOC_Os10g05710
Target Sequence 
ATGCTGGCTATATGTCGAATCCTCGTAATGCCAGATCTCAGACTAGGTTTGTATTTCTTTGTGGTAATACTGCCATTTCC
TGGCGGTTTGTAAAGCAGACCCTGGTTGCAACGTCAACCAACCACTCAGAAATAATTGCTCTATATGAGGCCACACGAGA
ATATGTGGGGCTTATGCGGATGATCGGTCACATCCAGAAGTCATGTGGCCTAAACATTGATAACACCCCCACCATCATCT
ATGAGGATAATGCTACTTGTGTTGCACAAATACATATGGGCTATGTGAAAAGCAATTTCACAAAGCATATTACTCTCAAA
TTCTTTTATCCCCATGAGCTCCAGAAGAGCGGGGAAATAAATGTCCTGCAAACTAAGTCATGCGAAAATCTCGCAGATTT
ATTTACAAAGTCTCTGCCAGCATCAAGTTTTCATAGATGTGTTCGTGGCATCGGCATGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis