Browse Element(s) Details


OsAffx.20747.1.S1_at

Description tigr:9638.m00490
TID=OsAffx.20747.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0577010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05710Os.46273.1.S1_at11/1110+2860114..2866525retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05730Os.18851.2.A1_at11/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05730Os.18851.1.A1_at10/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05720OsAffx.30305.1.S1_at11/1110+2869612..2870662Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g05740OsAffx.6586.1.S1_at11/1110+2878546..2880179hypothetical protein
LOC_Os10g05750Os.8203.1.S1_at11/1110+2881765..2883207proline-rich protein, putative, expressed
LOC_Os10g05770OsAffx.20747.1.S1_at10/1110+2889282..2892519hypothetical protein
LOC_Os10g05770OsAffx.14013.2.S1_at2/1110+2889282..2892519hypothetical protein
LOC_Os10g05780Os.46723.1.S1_at7/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05780OsAffx.29868.1.S1_at1/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05790Os.46488.1.S1_at11/1110+2905914..2907826expressed protein
LOC_Os10g05800Os.8494.1.S1_at10/1110+2909382..2918253F-box domain containing protein, expressed
LOC_Os10g05800Os.8143.1.S2_at1/1110+2909382..2918253F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20747.1.S1_at--108--4711Chr10:2891081..2891105 (25 bp)
GCGGCGATGCGGACTCTGATTTGAA
LOC_Os10g05770
OsAffx.20747.1.S1_at--816--2731Chr10:2891104..2891128 (25 bp)
AAGAAATCGGATGCAATTGGCCTCA
LOC_Os10g05770
OsAffx.20747.1.S1_at--977--5191Chr10:2891116..2891140 (25 bp)
GCAATTGGCCTCATGAAGTCAGCAA
LOC_Os10g05770
OsAffx.20747.1.S1_at--1017--8031Chr10:2891142..2891166 (25 bp)
GGAGTTCCATGGGATTGCTTTGCAA
LOC_Os10g05770
OsAffx.20747.1.S1_at--99--9391NONE
TCGAGTGCCGAGTCAGTGTCTGTGA
NONE
OsAffx.20747.1.S1_at--69--2471Chr10:2891827..2891851 (25 bp)
AACACCTAGACATTAGCACTTCGGG
LOC_Os10g05770
OsAffx.20747.1.S1_at--890--1651Chr10:2891853..2891877 (25 bp)
AGCCCTTCGATCAATTGTGGCCAAG
LOC_Os10g05770
OsAffx.20747.1.S1_at--593--3171Chr10:2891865..2891889 (25 bp)
AATTGTGGCCAAGCTATCAGTGCAA
LOC_Os10g05770
OsAffx.20747.1.S1_at--875--7771Chr10:2891892..2892124 (25 bp)
GGTGCAGCTCGGGAATTCAGTCTAC
LOC_Os10g05770
OsAffx.20747.1.S1_at--634--5572Chr10:2892183..2892204 (22 bp)
GAAAGGGTTTTCTCCATGTCTGCTA
LOC_Os10g05770
OsAffx.20747.1.S1_at--398--8551Chr10:2892426..2892450 (25 bp)
TGGAGTATCTTGTTACGATGAGCCT
LOC_Os10g05770
Target Sequence
GCGGCGATGCGGACTCTGATTTGAAGAAATCGGATGCAATTGGCCTCATGAAGTCAGCAAAGGAGTTCCATGGGATTGCT
TTGCAATCGAACAAATCACCAAGGCAAAAGGAGATCGGATTGGGACCTCTTGGCGGCGGTGATTTGGGACGACGAGCGTC
GAGTGCCGAGTCAGTGTCTGTGATGGATGCCGAGGCCGTGGAAAAGCAACAACACCTAGACATTAGCACTTCGGGGAGCC
CTTCGATCAATTGTGGCCAAGCTATCAGTGCAAAAGGTGCAGCTCGGGAATTCAGTCTACGGATGCGAAAAAGTGTGGAT
GTTGGATTTATTAGCTCGGTTCATAAGATGATAAGGAAGAAAGGGTTTTCTCCATGTCTGCTAGGAAGAATTCAATTCGC
TTGGCAAGATGACTGTGGTGATATGAGAGAAGGTGGAGCATTGTTGCGGGTGGAGTCAGAAGGAAGAAATTACAGGGATA
CTGGAGTATCTTGTTACGATGAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis