Browse Element(s) Details


OsAffx.29868.1.S1_at

Description tigr:9630.m05123
TID=OsAffx.29868.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=peptide transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5206011/11peptide transporter PTR2-B, putative
LOC_Os10g057801/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52010Os.12240.1.S1_at11/112+31834559..31835899Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g52020Os.46785.2.S1_x_at5/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52020OsAffx.442.1.S1_x_at1/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52020OsAffx.30226.2.S1_x_at1/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52030OsAffx.12606.1.S1_at11/112+31844582..31845422hypothetical protein
LOC_Os02g52040Os.9194.1.S1_at11/112+31845499..31846777phosphate-induced protein 1, putative, expressed
LOC_Os02g52050OsAffx.22940.5.S1_x_at9/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.2.S1_s_at8/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.3.S1_x_at8/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.1.S1_s_at7/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.5.S1_at6/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050Os.35344.3.S1_x_at5/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050Os.35344.18.S1_x_at4/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.2.S1_at4/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.31552.2.S1_at1/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52060OsAffx.29868.1.S1_at11/112+31859051..31860015peptide transporter PTR2-B, putative
LOC_Os02g52070Os.28943.1.S1_x_at3/112+31862917..31866053retrotransposon protein, putative, unclassified
LOC_Os02g52080NANA2+31866783..31869079retrotransposon protein, putative, unclassified
LOC_Os02g52090Os.27544.1.A1_at4/112+31872022..31877193retrotransposon protein, putative, unclassified
LOC_Os02g52090OsAffx.10711.1.S1_x_at1/112+31872022..31877193retrotransposon protein, putative, unclassified
LOC_Os02g52100NANA2+31880257..31886393retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29868.1.S1_at--84--6471Chr02:31859631..31859655 (25 bp)
GATAAGGAGTTCTCTGTGACCTTGG
LOC_Os02g52060
OsAffx.29868.1.S1_at--239--1231Chr02:31859624..31859648 (25 bp)
AGTTCTCTGTGACCTTGGAGCTCCA
LOC_Os02g52060
OsAffx.29868.1.S1_at--241--4791Chr02:31859605..31859629 (25 bp)
GCTCCACGCTCGGTTGTGGAAGACG
LOC_Os02g52060
OsAffx.29868.1.S1_at--458--1151Chr02:31859396..31859420 (25 bp)
AGTAGCACAATTAATGAAGCGGCGT
LOC_Os02g52060
OsAffx.29868.1.S1_at--400--7551Chr02:31859361..31859385 (25 bp)
GTGGCCTCGTCATGCCATCAGCGGG
LOC_Os02g52060
OsAffx.29868.1.S1_at--1064--7574Chr08:5063302..5063326 (25 bp)
GGGCTGCAGAGCTTCACCTACATCG
NONE
OsAffx.29868.1.S1_at--973--4291Chr02:31859322..31859346 (25 bp)
CCTACATCGCACTGCTGCCGGTGTA
LOC_Os02g52060
OsAffx.29868.1.S1_at--578--1691Chr02:31859295..31859319 (25 bp)
ACCACATGGTTGTGCCGCTCGCCAG
LOC_Os02g52060
OsAffx.29868.1.S1_at--37--9691Chr02:31859241..31859265 (25 bp)
TCACGATGCTCCAGCACGTCGGTGC
LOC_Os02g52060
OsAffx.29868.1.S1_at--205--7311Chr02:31859220..31859244 (25 bp)
GTGCTGGCATGGCAACAGCCTGCCT
LOC_Os02g52060
OsAffx.29868.1.S1_at--731--8291Chr02:31859150..31859174 (25 bp)
GGCTTGCGACACTGGCCTAGTGGAC
LOC_Os02g52060
Target Sequence 
GATAAGGAGTTCTCTGTGACCTTGGAGCTCCACGCTCGGTTGTGGAAGACGCCGAGCACCCTAGTCGCCGTCGCCGCCCT
CGCGTGGAGCGCGCGATGGTGCGCAACGAAGCTTGGTGTCCACTCCATTCGCCAATCACCAAGCAGAGTAGCACAATTAA
TGAAGCGGCGTGTCGGCGGCGGTGGCCTCGTCATGCCATCAGCGGGGCTGCAGAGCTTCACCTACATCGCACTGCTGCCG
GTGTACGACCACATGGTTGTGCCGCTCGCCAGGCGCCTCGCTGGCGGTGGCCGCGACGGCATCACGATGCTCCAGCACGT
CGGTGCTGGCATGGCAACAGCCTGCCTCACCACGGTCGTGGCGGCGCTCGTCGAGGCGAGACGGCTCCGCGTGGCTTGCG
ACACTGGCCTAGTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis