Browse Element(s) Details


Os.9194.1.S1_at

Description gb:AK070419.1
DB_XREF= gi:32980443
TID=Os.9194.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049J22, full insert sequence.
FL= gb:AK070419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5204011/11phosphate-induced protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51980NANA2+31820544..31824002retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g51990OsAffx.12605.1.S1_at11/112+31827901..31828101hypothetical protein
LOC_Os02g52000Os.7344.1.S1_at11/112+31829287..31830484Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g52010Os.12240.1.S1_at11/112+31834559..31835899Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g52020Os.46785.2.S1_x_at5/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52020OsAffx.442.1.S1_x_at1/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52020OsAffx.30226.2.S1_x_at1/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52030OsAffx.12606.1.S1_at11/112+31844582..31845422hypothetical protein
LOC_Os02g52040Os.9194.1.S1_at11/112+31845499..31846777phosphate-induced protein 1, putative, expressed
LOC_Os02g52050OsAffx.22940.5.S1_x_at9/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.2.S1_s_at8/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.3.S1_x_at8/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.1.S1_s_at7/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.5.S1_at6/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050Os.35344.3.S1_x_at5/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050Os.35344.18.S1_x_at4/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.2.S1_at4/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.31552.2.S1_at1/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52060OsAffx.29868.1.S1_at11/112+31859051..31860015peptide transporter PTR2-B, putative
LOC_Os02g52070Os.28943.1.S1_x_at3/112+31862917..31866053retrotransposon protein, putative, unclassified
LOC_Os02g52080NANA2+31866783..31869079retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9194.1.S1_at--339--5751Chr02:31846316..31846340 (25 bp)
GACGGCATGGTGATATCCCTCGCCT
LOC_Os02g52040
Os.9194.1.S1_at--786--251Chr02:31846328..31846352 (25 bp)
ATATCCCTCGCCTCGATGATCGTCG
LOC_Os02g52040
Os.9194.1.S1_at--628--8231Chr02:31846373..31846397 (25 bp)
GGCAACGGCTTCTTCCAGGGCGACG
LOC_Os02g52040
Os.9194.1.S1_at--743--8011Chr02:31846527..31846551 (25 bp)
GGAGGAAATACCTGGTCCCGGCGCT
LOC_Os02g52040
Os.9194.1.S1_at--623--3351Chr02:31846579..31846603 (25 bp)
CACCGTCGGGTAGATTTGTTGGAAT
LOC_Os02g52040
Os.9194.1.S1_at--252--6191Chr02:31846610..31846634 (25 bp)
GAGGACTGTTGTTTTGTTACCACGG
LOC_Os02g52040
Os.9194.1.S1_at--1014--8031Chr02:31846636..31846660 (25 bp)
GGAGAGTGTTCCACGCGGCTAAAAT
LOC_Os02g52040
Os.9194.1.S1_at--774--3351Chr02:31846647..31846671 (25 bp)
CACGCGGCTAAAATTTGTACCTGGG
LOC_Os02g52040
Os.9194.1.S1_at--663--7351Chr02:31846679..31846703 (25 bp)
GTGAAATTCTTTCATTTGTTCAATG
LOC_Os02g52040
Os.9194.1.S1_at--999--6671Chr02:31846732..31846756 (25 bp)
GTTCGAAACTGAATCAACATCCTCA
LOC_Os02g52040
Os.9194.1.S1_at--305--2511Chr02:31846747..31846771 (25 bp)
AACATCCTCACCTCGAGATCGATCA
LOC_Os02g52040
Target Sequence 
GACGGCATGGTGATATCCCTCGCCTCGATGATCGTCGGCACCGTCACCAACCCGTTCGGCAACGGCTTCTTCCAGGGCGA
CGCCGACGCGCCGCTGGAGGCCGCCACCGCGTGCGCCGGAGTGTACGGCAAGGGGGCGTACCCGGGTTACGCTGGGTCGC
TGCTGGTGGACCCGGCCAGCGGGGCCAGCTACAACGCGAATGGGGCGCACGGGAGGAAATACCTGGTCCCGGCGCTCGTA
GACCCCGACACGTCGGCCTGCTCCACCGTCGGGTAGATTTGTTGGAATGGAGTAGAGGACTGTTGTTTTGTTACCACGGT
GGAGAGTGTTCCACGCGGCTAAAATTTGTACCTGGGGGTAGTGGTGAAATTCTTTCATTTGTTCAATGAAAAAAAATATT
AGTTAAAGATAGTACTGTTCGAAACTGAATCAACATCCTCACCTCGAGATCGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis