Browse Element(s) Details


OsAffx.12606.1.S1_at

Description tigr:9630.m05120
TID=OsAffx.12606.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5203011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51980NANA2+31820544..31824002retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g51990OsAffx.12605.1.S1_at11/112+31827901..31828101hypothetical protein
LOC_Os02g52000Os.7344.1.S1_at11/112+31829287..31830484Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g52010Os.12240.1.S1_at11/112+31834559..31835899Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g52020Os.46785.2.S1_x_at5/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52020OsAffx.442.1.S1_x_at1/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52020OsAffx.30226.2.S1_x_at1/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52030OsAffx.12606.1.S1_at11/112+31844582..31845422hypothetical protein
LOC_Os02g52040Os.9194.1.S1_at11/112+31845499..31846777phosphate-induced protein 1, putative, expressed
LOC_Os02g52050OsAffx.22940.5.S1_x_at9/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.2.S1_s_at8/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.3.S1_x_at8/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.1.S1_s_at7/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.5.S1_at6/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050Os.35344.3.S1_x_at5/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050Os.35344.18.S1_x_at4/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.2.S1_at4/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.31552.2.S1_at1/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52060OsAffx.29868.1.S1_at11/112+31859051..31860015peptide transporter PTR2-B, putative
LOC_Os02g52070Os.28943.1.S1_x_at3/112+31862917..31866053retrotransposon protein, putative, unclassified
LOC_Os02g52080NANA2+31866783..31869079retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12606.1.S1_at--366--7371Chr02:31845003..31845027 (25 bp)
GTGACAGGTGAGTTGTGCGCCAACA
LOC_Os02g52030
OsAffx.12606.1.S1_at--535--9831Chr02:31845029..31845053 (25 bp)
TACAACCAACCTACTCGTACGAGTA
LOC_Os02g52030
OsAffx.12606.1.S1_at--799--7051Chr02:31845051..31845075 (25 bp)
GTAACTACTGCTGTGCGGTACATCA
LOC_Os02g52030
OsAffx.12606.1.S1_at--189--2351Chr02:31845075..31845099 (25 bp)
AAAGCTGTAGTGATACACCCCAAGT
LOC_Os02g52030
OsAffx.12606.1.S1_at--543--6751Chr02:31845107..31845131 (25 bp)
GTTCAAAACTGGGATGGCGCTGGCC
LOC_Os02g52030
OsAffx.12606.1.S1_at--679--9871Chr02:31845137..31845161 (25 bp)
TACATGCCATCCCAACGTTCGTGTT
LOC_Os02g52030
OsAffx.12606.1.S1_at--754--2551Chr02:31845274..31845298 (25 bp)
AACTGCCCATGCCTTTACGCAGGAT
LOC_Os02g52030
OsAffx.12606.1.S1_at--456--9951Chr02:31845289..31845313 (25 bp)
TACGCAGGATTCACCATGCCATCGA
LOC_Os02g52030
OsAffx.12606.1.S1_at--427--591Chr02:31845304..31845328 (25 bp)
ATGCCATCGAGCCACTGATCTACAG
LOC_Os02g52030
OsAffx.12606.1.S1_at--1100--8831Chr02:31845319..31845343 (25 bp)
TGATCTACAGTATCCGAGGCGCCAG
LOC_Os02g52030
OsAffx.12606.1.S1_at--818--1291Chr02:31845363..31845387 (25 bp)
AGATGCCCGCTCAGCAACAGCTGGG
LOC_Os02g52030
Target Sequence 
GTGACAGGTGAGTTGTGCGCCAACAGTACAACCAACCTACTCGTACGAGTAACTACTGCTGTGCGGTACATCAAAGCTGT
AGTGATACACCCCAAGTCCCCAACGTTCAAAACTGGGATGGCGCTGGCCCACGCTACATGCCATCCCAACGTTCGTGTTC
CCCTGCTCTCCGCACTCCACTCTGCAAGCTGCTTCAAGCCTCCTCGAGAAGCCAACCTGCTTTTACCCACTCCCGCAGTG
CCCACTTTACCCATTCCGCCCGCAATCCCTAAACTGCCCATGCCTTTACGCAGGATTCACCATGCCATCGAGCCACTGAT
CTACAGTATCCGAGGCGCCAGCTTGAGGGGTAGAATGGTCAGATGCCCGCTCAGCAACAGCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis