Browse Element(s) Details


Os.12240.1.S1_at

Description gb:AK063605.1
DB_XREF= gi:32973623
TID=Os.12240.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C09, full insert sequence.
FL= gb:AK063605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5201011/11Phi-1-like phosphate-induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51950Os.47984.1.A1_s_at11/112+31808470..31809740expressed protein
LOC_Os02g51950Os.47984.1.A1_at10/112+31808470..31809740expressed protein
LOC_Os02g51960Os.2987.3.S1_x_at4/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8980.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8272.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51970Os.7228.1.S1_at10/112+31818263..31819392Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g51980NANA2+31820544..31824002retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g51990OsAffx.12605.1.S1_at11/112+31827901..31828101hypothetical protein
LOC_Os02g52000Os.7344.1.S1_at11/112+31829287..31830484Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g52010Os.12240.1.S1_at11/112+31834559..31835899Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g52020Os.46785.2.S1_x_at5/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52020OsAffx.442.1.S1_x_at1/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52020OsAffx.30226.2.S1_x_at1/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52030OsAffx.12606.1.S1_at11/112+31844582..31845422hypothetical protein
LOC_Os02g52040Os.9194.1.S1_at11/112+31845499..31846777phosphate-induced protein 1, putative, expressed
LOC_Os02g52050OsAffx.22940.5.S1_x_at9/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.2.S1_s_at8/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.3.S1_x_at8/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.1.S1_s_at7/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.5.S1_at6/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050Os.35344.3.S1_x_at5/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050Os.35344.18.S1_x_at4/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.2.S1_at4/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.31552.2.S1_at1/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52060OsAffx.29868.1.S1_at11/112+31859051..31860015peptide transporter PTR2-B, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12240.1.S1_at--642--5071Chr02:31834963..31834987 (25 bp)
GCAGCGGTGCGTACCCCGGTTATGC
LOC_Os02g52010
Os.12240.1.S1_at--910--5751Chr02:31834914..31834938 (25 bp)
GACGGGAGCGAGCTACAACGCCAAT
LOC_Os02g52010
Os.12240.1.S1_at--640--2611Chr02:31834898..31834922 (25 bp)
AACGCCAATGGAGCACACGGGAGGA
LOC_Os02g52010
Os.12240.1.S1_at--299--5571Chr02:31834875..31834899 (25 bp)
GAAATACCTGCTTCCGGCTTTGTTC
LOC_Os02g52010
Os.12240.1.S1_at--187--4891Chr02:31834859..31834883 (25 bp)
GCTTTGTTCGATCCTGCCACGTCAA
LOC_Os02g52010
Os.12240.1.S1_at--390--6731Chr02:31834831..31834855 (25 bp)
GTTCAACTTTGGTGTGAGGGACTCA
LOC_Os02g52010
Os.12240.1.S1_at--702--5591Chr02:31834666..31834690 (25 bp)
GAAATAGCTATCCATCTACTAACAG
LOC_Os02g52010
Os.12240.1.S1_at--380--6935Chr12:7394640..7394664 (25 bp)
GTATGGCTTAATCTTGCACTTTTTT
NONE
Os.12240.1.S1_at--745--1731Chr02:31834608..31834632 (25 bp)
ACCATTGGTTGTATTTGAGATTCAC
LOC_Os02g52010
Os.12240.1.S1_at--692--6051Chr02:31834592..31834616 (25 bp)
GAGATTCACGCTATGCTGAGATTCG
LOC_Os02g52010
Os.12240.1.S1_at--1004--9091Chr02:31834579..31834603 (25 bp)
TGCTGAGATTCGTGCATGGCATAAG
LOC_Os02g52010
Target Sequence 
GCAGCGGTGCGTACCCCGGTTATGCCGGGAACCTGGCGGTGGACCCCGCGACGGGAGCGAGCTACAACGCCAATGGAGCA
CACGGGAGGAAATACCTGCTTCCGGCTTTGTTCGATCCTGCCACGTCAACCTGTTCAACTTTGGTGTGAGGGACTCAGGA
CGGAGGAAATATGGTGTAATGATAAACCGGTGTATATACGGAGCAAAGAGTGGTCAAGAGTAAATACTACTTGTACTTCT
TTGAAAAAAAATAATACCCCTAGATATGATTTTTTAAGAAGATCGGTAAATAAAATCGAAATAGCTATCCATCTACTAAC
AGATTTTGTATGGCTTAATCTTGCACTTTTTTTTTACCATTGGTTGTATTTGAGATTCACGCTATGCTGAGATTCGTGCA
TGGCATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis