Browse Element(s) Details


OsAffx.12605.1.S1_at

Description tigr:9630.m05116
TID=OsAffx.12605.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5199011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51939Os.54515.1.S1_at1/112+31804623..31805352NA
LOC_Os02g51950Os.47984.1.A1_s_at11/112+31808470..31809740expressed protein
LOC_Os02g51950Os.47984.1.A1_at10/112+31808470..31809740expressed protein
LOC_Os02g51960Os.2987.3.S1_x_at4/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8980.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8272.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51970Os.7228.1.S1_at10/112+31818263..31819392Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g51980NANA2+31820544..31824002retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g51990OsAffx.12605.1.S1_at11/112+31827901..31828101hypothetical protein
LOC_Os02g52000Os.7344.1.S1_at11/112+31829287..31830484Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g52010Os.12240.1.S1_at11/112+31834559..31835899Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g52020Os.46785.2.S1_x_at5/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52020OsAffx.442.1.S1_x_at1/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52020OsAffx.30226.2.S1_x_at1/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52030OsAffx.12606.1.S1_at11/112+31844582..31845422hypothetical protein
LOC_Os02g52040Os.9194.1.S1_at11/112+31845499..31846777phosphate-induced protein 1, putative, expressed
LOC_Os02g52050OsAffx.22940.5.S1_x_at9/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.2.S1_s_at8/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.3.S1_x_at8/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.1.S1_s_at7/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.5.S1_at6/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050Os.35344.3.S1_x_at5/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050Os.35344.18.S1_x_at4/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.22940.2.S1_at4/112+31848511..31855293transposon protein, putative, Mutator sub-class
LOC_Os02g52050OsAffx.31552.2.S1_at1/112+31848511..31855293transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12605.1.S1_at--611--5751Chr02:31827963..31827987 (25 bp)
GACGGTCAGATCCAGCCCAGCAGAT
LOC_Os02g51990
OsAffx.12605.1.S1_at--382--1931Chr02:31827964..31827988 (25 bp)
ACGGTCAGATCCAGCCCAGCAGATC
LOC_Os02g51990
OsAffx.12605.1.S1_at--762--9651Chr02:31827968..31827992 (25 bp)
TCAGATCCAGCCCAGCAGATCTGGT
LOC_Os02g51990
OsAffx.12605.1.S1_at--582--1291Chr02:31827970..31827994 (25 bp)
AGATCCAGCCCAGCAGATCTGGTGA
LOC_Os02g51990
OsAffx.12605.1.S1_at--259--6371Chr02:31827971..31827995 (25 bp)
GATCCAGCCCAGCAGATCTGGTGAG
LOC_Os02g51990
OsAffx.12605.1.S1_at--54--591Chr02:31827972..31827996 (25 bp)
ATCCAGCCCAGCAGATCTGGTGAGA
LOC_Os02g51990
OsAffx.12605.1.S1_at--1013--9211Chr02:31827973..31827997 (25 bp)
TCCAGCCCAGCAGATCTGGTGAGAG
LOC_Os02g51990
OsAffx.12605.1.S1_at--819--4351Chr02:31827974..31827998 (25 bp)
CCAGCCCAGCAGATCTGGTGAGAGG
LOC_Os02g51990
OsAffx.12605.1.S1_at--140--8031Chr02:31827999..31828023 (25 bp)
GGAGGTAGATCCGACCGGGAGTGGC
LOC_Os02g51990
OsAffx.12605.1.S1_at--619--1291Chr02:31828005..31828029 (25 bp)
AGATCCGACCGGGAGTGGCGGCCCG
LOC_Os02g51990
OsAffx.12605.1.S1_at--72--6131Chr02:31828017..31828041 (25 bp)
GAGTGGCGGCCCGACAGGAGAGGAG
LOC_Os02g51990
Target Sequence 
GACGGTCAGATCCAGCCCAGCAGATCTGGTGAGAGGGGAGGTAGATCCGACCGGGAGTGGCGGCCCGACAGGAGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis