Browse Element(s) Details


Os.54515.1.S1_at

Description gb:AK109448.1
DB_XREF= gi:32994657
TID=Os.54515.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54515 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-G01, full insert sequence.
FL= gb:AK109448.1 gb:AK105500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g519391/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51890Os.10870.1.S1_at11/112+31775709..31781275RNA recognition motif family protein, expressed
LOC_Os02g51900Os.52310.1.S1_at11/112+31781479..31783150Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S2_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S1_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51920OsAffx.12604.1.S1_at9/112+31793780..31794667hypothetical protein
LOC_Os02g51930Os.53614.1.S1_at11/112+31800108..31801997Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51939Os.54515.1.S1_at1/112+31804623..31805352NA
LOC_Os02g51950Os.47984.1.A1_s_at11/112+31808470..31809740expressed protein
LOC_Os02g51950Os.47984.1.A1_at10/112+31808470..31809740expressed protein
LOC_Os02g51960Os.2987.3.S1_x_at4/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8980.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8272.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51970Os.7228.1.S1_at10/112+31818263..31819392Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g51980NANA2+31820544..31824002retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g51990OsAffx.12605.1.S1_at11/112+31827901..31828101hypothetical protein
LOC_Os02g52000Os.7344.1.S1_at11/112+31829287..31830484Phi-1-like phosphate-induced protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54515.1.S1_at--592--7091Chr04:8247199..8247223 (25 bp)
GTCGCGGGCGAATCCGAGGGTGGTG
NONE
Os.54515.1.S1_at--862--9291Chr04:8247287..8247311 (25 bp)
TCCGCAGGCGGATCAAGCGGCGGTG
NONE
Os.54515.1.S1_at--115--3231Chr04:8247333..8247357 (25 bp)
CAAGTCCCGCGGTCGATCCGACGGT
NONE
Os.54515.1.S1_at--679--3933Chr11:10347882..10348257 (25 bp)
CGGCGTCCGCGGGTGGATCCATTAA
NONE
Os.54515.1.S1_at--976--7231Chr04:8247376..8247400 (25 bp)
GTCCGCGGGTGGATCCATTAACAGT
NONE
Os.54515.1.S1_at--275--6371Chr04:8247387..8247411 (25 bp)
GATCCATTAACAGTGGCGGTGGGCA
NONE
Os.54515.1.S1_at--92--3971Chr04:8247485..8247509 (25 bp)
CGGATGGACCCAGTGGCGGTAGCAA
NONE
Os.54515.1.S1_at--806--7531Chr04:8247497..8247521 (25 bp)
GTGGCGGTAGCAACGGCCGAGGGCA
NONE
Os.54515.1.S1_at--364--6373Chr04:8247566..8247590 (25 bp)
GATCCGGTGGCAGGCGAGTGAAGTT
NONE
Os.54515.1.S1_at--257--2831Chr04:8247586..8247610 (25 bp)
AAGTTTGTGGTGTATATTGTTGTTC
NONE
Os.54515.1.S1_at--600--8813Chr04:8247603..8247627 (25 bp)
TGTTGTTCTTCTTGGATGATTATTT
NONE
Target Sequence 
GTCGCGGGCGAATCCGAGGGTGGTGGCGGCGGCTCCCTCCATCCCCTCTAGCCTTCCTCCTGTGGCAGATCCGCCGGCGG
CGGCGGCCTCCGCAGGCGGATCAAGCGGCGGTGGCTCCCTCCGCCCCCTCTCGCCAAGTCCCGCGGTCGATCCGACGGTG
GTGGCGGCGTTGGCGGCGTCCGCGGGTGGATCCATTAACAGTGGCGGTGGGCAGATCCGGTAGCGGCGGCTCCCTCCGCC
GCCTCTCTTCTCCCTCCGGCGGCGGTGGTGGTGTCGGCGGCGGCCGCGGATGGACCCAGTGGCGGTAGCAACGGCCGAGG
GCAGCGGTGGCAACGGCCGAGGGCCACGGTGGCGATGGCCGAGGGCGGATCCGGTGGCAGGCGAGTGAAGTTTGTGGTGT
ATATTGTTGTTCTTCTTGGATGATTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54515.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis