Browse Element(s) Details


Os.7228.1.S1_at

Description gb:AK101655.1
DB_XREF= gi:32986864
TID=Os.7228.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033057F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057F02, full insert sequence.
FL= gb:AK101655.1 gb:AK119695.1 gb:AK063454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5197010/11Phi-1-like phosphate-induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51920OsAffx.12604.1.S1_at9/112+31793780..31794667hypothetical protein
LOC_Os02g51930Os.53614.1.S1_at11/112+31800108..31801997Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51939Os.54515.1.S1_at1/112+31804623..31805352NA
LOC_Os02g51950Os.47984.1.A1_s_at11/112+31808470..31809740expressed protein
LOC_Os02g51950Os.47984.1.A1_at10/112+31808470..31809740expressed protein
LOC_Os02g51960Os.2987.3.S1_x_at4/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8980.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8272.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51970Os.7228.1.S1_at10/112+31818263..31819392Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g51980NANA2+31820544..31824002retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g51990OsAffx.12605.1.S1_at11/112+31827901..31828101hypothetical protein
LOC_Os02g52000Os.7344.1.S1_at11/112+31829287..31830484Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g52010Os.12240.1.S1_at11/112+31834559..31835899Phi-1-like phosphate-induced protein, putative, expressed
LOC_Os02g52020Os.46785.2.S1_x_at5/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52020OsAffx.442.1.S1_x_at1/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52020OsAffx.30226.2.S1_x_at1/112+31836991..31841109retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7228.1.S1_at--307--7111Chr02:31818800..31818824 (25 bp)
GTCACCGTCGAAGGCTTCTGCAGCA
LOC_Os02g51970
Os.7228.1.S1_at--1096--8611Chr02:31818725..31818749 (25 bp)
TGGGTCGGCAACTCTGCGAAGCAGT
LOC_Os02g51970
Os.7228.1.S1_at--581--6291Chr02:31818600..31818624 (25 bp)
GATGATCCTCGCCTCGATGGTGGCC
LOC_Os02g51970
Os.7228.1.S1_at--956--4371Chr02:31818415..31818439 (25 bp)
CCAACGGCGCGAACAGGAGGAAGTA
LOC_Os02g51970
Os.7228.1.S1_at--414--8331Chr02:31818381..31818405 (25 bp)
GGCGTTGTACAATCCCGCAACGTCC
LOC_Os02g51970
Os.7228.1.S1_at--73--3831Chr02:31818354..31818378 (25 bp)
CTGCGACACGCTTGTGTAATCCATA
LOC_Os02g51970
Os.7228.1.S1_at--575--7051Chr02:31818339..31818363 (25 bp)
GTAATCCATAGTGCCGGACACGTTA
LOC_Os02g51970
Os.7228.1.S1_at--933--2171Chr02:31818322..31818346 (25 bp)
ACACGTTACGTGTTCTGTACCTGTA
LOC_Os02g51970
Os.7228.1.S1_at--759--9471Chr02:31818309..31818333 (25 bp)
TCTGTACCTGTACGCTTGGGAAGTT
LOC_Os02g51970
Os.7228.1.S1_at--326--1831Chr02:31818298..31818322 (25 bp)
ACGCTTGGGAAGTTGTACATACGAG
LOC_Os02g51970
Os.7228.1.S1_at--184--2971Chr02:31818263..31818287 (25 bp)
AATGGAATCACTTTGTTCGTTCTAA
NONE
Target Sequence 
GTCACCGTCGAAGGCTTCTGCAGCAGCCGGTGCGGCAAGCACGGCTCGGACGCGAGCGCCGGCACCACCCACATCTGGGT
CGGCAACTCTGCGAAGCAGTGCCCGGGGCAGTGCGCGTGGCCGTTCGCGCAGCCGGTGTACGGGCCACAGGGCACGCCGC
TGGTGGCGCCCAACAACGACGTCGGCGCGGACGGGATGGTGATGATCCTCGCCTCGATGGTGGCCGGCACGGTGACCAAC
CCGTACGGCGATGGGTTCTACCAGGGGCCCCAGGACGCGCCGCTGGAGGCGTGCTCGGCGTGCCCGGGAGTCTACGGCAG
CGGCGCGTACCCGGGGAACGCCGGTAAACTCCTCGTCGACGCCACCACCGGAGCCAGCTACAACGCCAACGGCGCGAACA
GGAGGAAGTACCTGCTCCCGGCGTTGTACAATCCCGCAACGTCCTCCTGCGACACGCTTGTGTAATCCATAGTGCCGGAC
ACGTTACGTGTTCTGTACCTGTACGCTTGGGAAGTTGTACATACGAGTTGGGAAAGTAATGGAATCACTTTGTTCGTTCT
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis