Browse Element(s) Details


OsAffx.442.1.S1_x_at

Description gb:NM_194503.1
DB_XREF= gi:37530365
TID=OsAffx.442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative pol polyprotein (OSJNBa0096E22.13), mRNA.
PROD=putative pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0145011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g144109/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g137908/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g464507/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g017807/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g086406/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g329106/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g242606/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g108906/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g083706/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g733805/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g119405/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g055505/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g233205/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g212005/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g536104/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g724004/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g150304/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g293204/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g123904/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g191604/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g179704/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g187804/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g111603/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g184203/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g093803/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g279103/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g357403/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g139603/11retrotransposon protein, putative, unclassified
LOC_Os12g167103/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g232403/11hypothetical protein
LOC_Os05g052503/11retrotransposon protein, putative, unclassified
LOC_Os02g356703/11hypothetical protein
LOC_Os08g406402/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g119801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g166801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g191901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g112901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g026701/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g107101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g551401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g432201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g052001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g222101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g365001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g058401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g341201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g442901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g479201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g026001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g205701/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g038301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g520201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g115501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g418301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g505301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g121301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g351101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g210801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g120901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g358101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g352901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g120901/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01400OsAffx.30224.1.S1_at11/1110+227709..228730hypothetical protein
LOC_Os10g01410OsAffx.20818.1.S1_at10/1110+233481..235579Calcium binding EGF domain containing protein
LOC_Os10g01420OsAffx.28442.1.S1_at11/1110+236922..237188hypothetical protein
LOC_Os10g01430OsAffx.30225.1.S1_at11/1110+244165..244653hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_x_at10/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_at9/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.4.S1_x_at1/1110+249251..251270hypothetical protein
LOC_Os10g01450OsAffx.442.1.S1_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.442.1.S1_x_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_s_at10/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_x_at4/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.19052.1.S1_at1/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01460OsAffx.30227.1.S1_at11/1110+266298..266711hypothetical protein
LOC_Os10g01470Os.27388.1.S1_s_at11/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed
LOC_Os10g01470Os.49759.1.S1_x_at1/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.442.1.S1_x_at--1002--100551Chr12:21795501..21795523 (23 bp)
TAGTAGATACATGGCTAATCCTGGT
LOC_Os12g35810
OsAffx.442.1.S1_x_at--999--52922Chr10:256493..256517 (25 bp)
GAAGGCAACATTGCAGCCTGTTGTT
LOC_Os10g01450
OsAffx.442.1.S1_x_at--51--66527Chr10:256512..256536 (25 bp)
GTTGTTGCCCAGTCTACCACTGAAG
LOC_Os10g01450
OsAffx.442.1.S1_x_at--485--52323Chr10:256539..256563 (25 bp)
GAATACATGGCTATTGCTGAAGCAT
LOC_Os10g01450
OsAffx.442.1.S1_x_at--614--68527Chr12:5132467..5132491 (25 bp)
GTTTGCTGAGCTTTGTGGAGTTGAT
NONE
OsAffx.442.1.S1_x_at--1052--80317Chr12:5132483..5132937 (25 bp)
GGAGTTGATTCTTGCATTATCTTGT
NONE
OsAffx.442.1.S1_x_at--595--70911Chr12:5132517..5132541 (25 bp)
GTCAAAGTGCTATATGCCTCACCAA
NONE
OsAffx.442.1.S1_x_at--191--65124Chr10:256701..256725 (25 bp)
GATATCAAGTACCATTATGTTCGCG
LOC_Os10g01450
OsAffx.442.1.S1_x_at--167--101315Chr10:256716..256740 (25 bp)
TATGTTCGCGATGTAGTCGTGCAAG
LOC_Os10g01450
OsAffx.442.1.S1_x_at--464--9411Chr10:256732..256926 (25 bp)
TCGTGCAAGGGCGAAGGATTGATTC
LOC_Os10g01450
OsAffx.442.1.S1_x_at--424--8033Chr10:256956..256980 (25 bp)
GGAGTTTGTTGAATTGTGATCCAAA
LOC_Os10g01450
Target Sequence 
TAGTAGATACATGGCTAATCCTGGTAAAGAACACTGGAAAGCTGTTCAGTGGATTTTCAGGTACCTCAGAGGCACAGCTG
ATGCTTGCTTGAAGTTTGGCAGGACTGATAAGGGGCTTGTTGGATATGTGGATTCTGATTTTGCTGCAGATTTGGATAAG
AGAAGGTCACTCACAGGTTATGTGTTTACCATTAGTAGTTGTGCTATGAGTTGGAAGGCAACATTGCAGCCTGTTGTTGC
CCAGTCTACCACTGAAGCAGAATACATGGCTATTGCTGAAGCATGTAAAGAATCAGTTTGGCTGAAAGGATTGTTTGCTG
AGCTTTGTGGAGTTGATTCTTGCATTATCTTGTTTTGTGACAGTCAAAGTGCTATATGCCTCACCAAAGATCAGATGTTT
CATGAGAGGACAAAGCACATTGATATCAAGTACCATTATGTTCGCGATGTAGTCGTGCAAGGGCGAAGGATTGATTCATG
CTACAAGAAGGGATTTGTCTCCAGGTGGAGTTTGTTGAATTGTGATCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.442.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis