Browse Element(s) Details


OsAffx.20818.1.S1_at

Description gb:NM_194500.1
DB_XREF= gi:37530359
TID=OsAffx.20818.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative wall-associated protein kinase (OSJNBa0096E22.11), mRNA.
PROD=putative wall-associated protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1447011/11hypothetical protein
LOC_Os10g0141010/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14410OsAffx.442.1.S1_x_at9/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.2.S1_s_at6/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.4.S1_x_at5/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.442.1.S1_at4/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.4.S1_at4/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.2.S1_x_at4/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.1.S1_x_at3/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.1.S1_at1/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.24587.1.S1_x_at1/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.19052.1.S1_at1/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14420OsAffx.28440.1.S1_at11/117+8228926..8229653hypothetical protein
LOC_Os07g14430NANA7+8234912..8237094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g14440OsAffx.16261.1.S1_at10/117+8237465..8238290hypothetical protein
LOC_Os07g14450OsAffx.28441.1.S1_at11/117+8239687..8240493hypothetical protein
LOC_Os07g14460OsAffx.28442.1.S1_at11/117+8245083..8245349hypothetical protein
LOC_Os07g14470OsAffx.20818.1.S1_at11/117+8246699..8248756hypothetical protein
LOC_Os07g14480NANA7+8249928..8250332hypothetical protein
LOC_Os07g14490OsAffx.30223.2.S1_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14490OsAffx.30223.1.S1_s_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14500OsAffx.30223.1.S1_at11/117+8257378..8258557hypothetical protein
LOC_Os07g14514Os.38884.2.S1_x_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.27723.1.S1_a_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38884.1.S1_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38157.1.S1_s_at1/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005618cellular_componentcell wall
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20818.1.S1_at--681--8472Chr07:8246922..8246946 (25 bp)
TGGCGGCCACCAGCTTGAGCATCGT
LOC_Os07g14470
OsAffx.20818.1.S1_at--343--8912Chr07:8246937..8246961 (25 bp)
TGAGCATCGTGCAGAACCTGTCGGT
LOC_Os07g14470
OsAffx.20818.1.S1_at--291--1432Chr07:8246949..8246973 (25 bp)
AGAACCTGTCGGTGGAGTCGCCTCC
LOC_Os07g14470
OsAffx.20818.1.S1_at--365--6532Chr07:8247035..8247059 (25 bp)
GATTTCAACGGCGAGGTAGAGCTGA
LOC_Os07g14470
OsAffx.20818.1.S1_at--128--9972Chr07:8247074..8247098 (25 bp)
TACCGCATCTCCGATGAGCTGAACA
LOC_Os07g14470
OsAffx.20818.1.S1_at--624--7392Chr07:8247150..8247174 (25 bp)
GTGAGGGCGGCCTATACCCGTACCT
LOC_Os07g14470
OsAffx.20818.1.S1_at--758--10552Chr07:8247296..8247320 (25 bp)
TTCGACTCGTGGAACCGTACCAAGT
LOC_Os07g14470
OsAffx.20818.1.S1_at--86--7612Chr07:8247587..8247611 (25 bp)
GGGAACCCTTATGAGTATTACGATG
LOC_Os07g14470
OsAffx.20818.1.S1_at--1029--9452Chr07:8248311..8248331 (21 bp)
TCTGGGTTACCAGTCTAATGATGCA
LOC_Os07g14470
OsAffx.20818.1.S1_at--313--5631Chr07:8248334..8248358 (25 bp)
GACACAACAGTGCACTCCTAAGTTC
LOC_Os07g14470
OsAffx.20818.1.S1_at--599--3732Chr07:8248351..8248375 (25 bp)
CTAAGTTCCCCGTTGCATCAAGAAT
LOC_Os07g14470
Target Sequence 
TGGCGGCCACCAGCTTGAGCATCGTGCAGAACCTGTCGGTGGAGTCGCCTCCAATGGCGAAGGTGATGCTGCCGGTGGCA
TACAAGTGCTACNACGACCCAACAAAAACCCAAGATTTCAACGGCGAGGTAGAGCTGAACAAGACCGGCGTGTACCGCAT
CTCCGATGAGCTGAACATGCTGGTCGTCCTCGNCTGCAACACCATGGTGTACACCAAGAACGGCAACAGTGAGGGCGGCC
TATACCCGTACCTCTACTACACCGGCTGCATCGCCTACTGCAACGACTCNAGGAGCGCACAAGACGGCAAGTGCGCCGGT
GCCGGCTGCTGCCATGTCGACATCCCCGGTGGCCTCACCGACAACACCCTCGTCTTCGACTCGTGGAACCGTACCAAGTN
NCTCCCAGCCTACCATGGGAACCCTTATGAGTATTACGATGACAAGCAGGGCAAAGATGTCTGGGTTACCAGTCTAATGA
TGCAAAGACACAACAGTGCACTCCTAAGTTCCCCGTTGCATCAAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis