Browse Element(s) Details


OsAffx.442.1.S1_at

Description gb:NM_194503.1
DB_XREF= gi:37530365
TID=OsAffx.442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative pol polyprotein (OSJNBa0096E22.13), mRNA.
PROD=putative pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0145011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g329105/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g083704/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g144104/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g086404/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g191603/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g212003/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g733803/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g108903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g137903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g233203/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g150302/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g187802/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g293202/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g179702/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g232402/11hypothetical protein
LOC_Os04g093802/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g119402/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g167102/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g406401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g055501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g107101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g242601/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g017801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g357401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g724001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g123901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g279101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g111601/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g356701/11hypothetical protein
LOC_Os03g464501/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01400OsAffx.30224.1.S1_at11/1110+227709..228730hypothetical protein
LOC_Os10g01410OsAffx.20818.1.S1_at10/1110+233481..235579Calcium binding EGF domain containing protein
LOC_Os10g01420OsAffx.28442.1.S1_at11/1110+236922..237188hypothetical protein
LOC_Os10g01430OsAffx.30225.1.S1_at11/1110+244165..244653hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_x_at10/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_at9/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.4.S1_x_at1/1110+249251..251270hypothetical protein
LOC_Os10g01450OsAffx.442.1.S1_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.442.1.S1_x_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_s_at10/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_x_at4/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.19052.1.S1_at1/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01460OsAffx.30227.1.S1_at11/1110+266298..266711hypothetical protein
LOC_Os10g01470Os.27388.1.S1_s_at11/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed
LOC_Os10g01470Os.49759.1.S1_x_at1/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.442.1.S1_at--331--102531Chr12:5132478..5132501 (24 bp)
TTTGTGGAGTTGATTCTTGCATTAT
NONE
OsAffx.442.1.S1_at--933--7516Chr10:256606..256630 (25 bp)
GTGGAGTTGATTCTTGCATTATCTT
LOC_Os10g01450
OsAffx.442.1.S1_at--1053--80317Chr12:5132483..5132937 (25 bp)
GGAGTTGATTCTTGCATTATCTTGT
NONE
OsAffx.442.1.S1_at--442--104317Chr10:256715..256739 (25 bp)
TTATGTTCGCGATGTAGTCGTGCAA
LOC_Os10g01450
OsAffx.442.1.S1_at--166--101315Chr10:256716..256740 (25 bp)
TATGTTCGCGATGTAGTCGTGCAAG
LOC_Os10g01450
OsAffx.442.1.S1_at--849--735Chr10:256717..256741 (25 bp)
ATGTTCGCGATGTAGTCGTGCAAGG
LOC_Os10g01450
OsAffx.442.1.S1_at--463--9411Chr10:256732..256926 (25 bp)
TCGTGCAAGGGCGAAGGATTGATTC
LOC_Os10g01450
OsAffx.442.1.S1_at--895--7331Chr10:256734..256928 (25 bp)
GTGCAAGGGCGAAGGATTGATTCAT
LOC_Os10g01450
OsAffx.442.1.S1_at--604--7732Chr10:256953..256977 (25 bp)
GGTGGAGTTTGTTGAATTGTGATCC
LOC_Os10g01450
OsAffx.442.1.S1_at--423--8033Chr10:256956..256980 (25 bp)
GGAGTTTGTTGAATTGTGATCCAAA
LOC_Os10g01450
OsAffx.442.1.S1_at--688--6852Chr10:256959..256983 (25 bp)
GTTTGTTGAATTGTGATCCAAATTC
LOC_Os10g01450
Target Sequence 
TTTGTGGAGTTGATTCTTGCATTATCTTGTTTTGTGACAGTCAAAGTGCTATATGCCTCACCAAAGATCAGATGTTTCAT
GAGAGGACAAAGCACATTGATATCAAGTACCATTATGTTCGCGATGTAGTCGTGCAAGGGCGAAGGATTGATTCATGCTA
CAAGAAGGGATTTGTCTCCAGGTGGAGTTTGTTGAATTGTGATCCAAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis