Browse Element(s) Details


Os.49759.1.S1_x_at

Description gb:AY559046.1
DB_XREF= gi:45593097
TID=Os.49759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.49759 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) homeodomain leucine zipper protein 11 (hox11) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) homeodomain leucine zipper protein 11 (hox11) mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2745010/11Homeobox associated leucine zipper family protein, expressed
LOC_Os08g362203/11Homeobox-leucine zipper protein HAT14, putative, expressed
LOC_Os06g048501/11Homeobox-leucine zipper protein HAT3, putative, expressed
LOC_Os10g014701/11Homeobox-leucine zipper protein HAT22, putative, expressed
LOC_Os02g056401/11Homeobox domain containing protein
LOC_Os10g412301/11HD-ZIP protein N terminus containing protein, expressed
LOC_Os09g388901/11hypothetical protein
LOC_Os06g048701/11SlHDL2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27400OsAffx.30057.1.S1_at10/119+16647821..16649401expressed protein
LOC_Os09g27410NANA9+16652112..16652372hypothetical protein
LOC_Os09g27420Os.14842.1.S1_at11/119+16653815..16657634Formate-tetrahydrofolate ligase, putative, expressed
LOC_Os09g27430OsAffx.6415.1.S1_at11/119+16658578..16659351hypothetical protein
LOC_Os09g27440OsAffx.17932.1.S1_at11/119+16659907..16660425hypothetical protein
LOC_Os09g27450OsAffx.17933.1.S1_at11/119+16673597..16675209Homeobox associated leucine zipper family protein, expressed
LOC_Os09g27450Os.49759.1.S1_x_at10/119+16673597..16675209Homeobox associated leucine zipper family protein, expressed
LOC_Os09g27460NANA9+16680045..16680362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27470NANA9+16681896..16684189retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27480Os.29072.1.S1_at11/119+16695170..16696422expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49759.1.S1_x_at--1029--972Chr09:16674533..16674557 (25 bp)
AGGAGAGCTTCAAGGAGCACAGCAC
LOC_Os09g27450
Os.49759.1.S1_x_at--1104--1351Chr09:16674530..16674554 (25 bp)
AGAGCTTCAAGGAGCACAGCACCCT
LOC_Os09g27450
Os.49759.1.S1_x_at--838--4891Chr09:16674527..16674551 (25 bp)
GCTTCAAGGAGCACAGCACCCTAAA
LOC_Os09g27450
Os.49759.1.S1_x_at--657--10491Chr09:16674525..16674549 (25 bp)
TTCAAGGAGCACAGCACCCTAAACC
LOC_Os09g27450
Os.49759.1.S1_x_at--212--1791NONE
ACCCTAAACCCCAAGCAGAAGCTGG
NONE
Os.49759.1.S1_x_at--608--2371Chr09:16674398..16674529 (25 bp)
AAACCCCAAGCAGAAGCTGGCGCTG
LOC_Os09g27450
Os.49759.1.S1_x_at--777--3912Chr09:16674382..16674406 (25 bp)
CTGGCGCTGGCGAAGCAGCTCAACC
LOC_Os09g27450
Os.49759.1.S1_x_at--889--8452Chr09:16674375..16674399 (25 bp)
TGGCGAAGCAGCTCAACCTCCGGCC
LOC_Os09g27450
Os.49759.1.S1_x_at--769--4336Chr10:21823840..21823863 (24 bp)
CCAGGTGGAGGTGTGGTTCCAGAAC
LOC_Os10g41230
Os.49759.1.S1_x_at--986--4151Chr09:16674219..16674316 (25 bp)
CGCCGCGCCAGGACGAAGCTGAAGC
LOC_Os09g27450
Os.49759.1.S1_x_at--241--4772Chr10:269681..269705 (25 bp)
GCTGCGAGACGCTGACGGAGGAGAA
LOC_Os10g01470
Target Sequence 
AGGAGAGCTTCAAGGAGCACAGCACCCTAAACCCCAAGCAGAAGCTGGCGCTGGCGAAGCAGCTCAACCTCCGGCCGCGC
CAGGTGGAGGTGTGGTTCCAGAACCGCCGCGCCAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGTACCTGAAGCG
GTGCTGCGAGACGCTGACGGAGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49759.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis