Browse Element(s) Details


Os.29072.1.S1_at

Description gb:AK110679.1
DB_XREF= gi:32995888
TID=Os.29072.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0086A10.17 (OSJNBa0086A10.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-H02, full insert sequence.
FL= gb:AK110679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2748011/11expressed protein
LOC_Os01g352404/11hypothetical protein
LOC_Os11g404904/11BTB/POZ domain containing protein, expressed
LOC_Os07g075303/11expressed protein
LOC_Os08g383502/11hypothetical protein
LOC_Os12g420002/11hypothetical protein
LOC_Os11g098101/11hypothetical protein
LOC_Os01g098201/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27450OsAffx.17933.1.S1_at11/119+16673597..16675209Homeobox associated leucine zipper family protein, expressed
LOC_Os09g27450Os.49759.1.S1_x_at10/119+16673597..16675209Homeobox associated leucine zipper family protein, expressed
LOC_Os09g27460NANA9+16680045..16680362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27470NANA9+16681896..16684189retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27480Os.29072.1.S1_at11/119+16695170..16696422expressed protein
LOC_Os09g27490OsAffx.17934.1.S1_at8/119+16703604..16708432hypothetical protein
LOC_Os09g27500Os.27525.2.S1_x_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27500Os.27525.1.A1_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27510Os.56907.1.S1_at9/119+16717632..16719922Cytochrome P450 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29072.1.S1_at--985--10174Chr04:17891160..17891184 (25 bp)
TATATGCGGCTACACCGACAACCAC
NONE
Os.29072.1.S1_at--691--3313Chr01:19838838..19838862 (25 bp)
CACAGTTACTTCATGATCGGCTACA
NONE
Os.29072.1.S1_at--642--2415Chr04:17891240..17891263 (24 bp)
AAAACTCCAGTCCAAGCGTCCGTGT
NONE
Os.29072.1.S1_at--302--92917Chr12:26010861..26010885 (25 bp)
TCCGTGTCATCGCTATCGTCCATGA
LOC_Os12g42000
Os.29072.1.S1_at--937--6715Chr12:26010882..26010906 (25 bp)
ATGACACTCCCGCTATGACTGCGGG
LOC_Os12g42000
Os.29072.1.S1_at--833--104910Chr12:12880154..12880178 (25 bp)
TTCAAATCCAGTCGCAATCGTTCGC
NONE
Os.29072.1.S1_at--718--49120Chr11:23662504..23662528 (25 bp)
GCTTCGCTCCCGTTACGACTGAGGG
LOC_Os11g40490
Os.29072.1.S1_at--708--68725Chr11:20868893..20868917 (25 bp)
GTATTGTACTCCAAGTCTCTATCCC
NONE
Os.29072.1.S1_at--889--37521Chr12:12880333..12880357 (25 bp)
CTCTATCCCCTATGTACTCCTATAT
NONE
Os.29072.1.S1_at--723--19922Chr10:9650669..9650693 (25 bp)
ACTCCTATATATACCCCATGAGAGG
NONE
Os.29072.1.S1_at--141--6038Chr03:4200777..4200801 (25 bp)
GAGAGGGTCGATCCAATATATCAGA
NONE
Target Sequence 
TATATGCGGCTACACCGACAACCACAGTTACTTCATGATCGGCTACATTGACGAACGTCTACAACAAAAATCATTGACGA
AAACTCCAGTCCAAGCGTCCGTGTCATCGCTATCGTCCATGACACTCCCGCTATGACTGCGGGAGGGAATAGAGGAGAGT
CAAGGGACGACACAGAAGGGGACGCAGGCACCAGGTGGAGGACCGTCCATCAGAGATGCAGTCGATGATGGTGAGTCAAA
GAAAGATGAAGAAATAGAAGATTTCAAATCCAGTCGCAATCGTTCGCTTCGCTCCCGTTACGACTGAGGGGGAATGTTAG
AAGTATAATATGGTAGTTAGAGATAAGAGTCAAATACAAATTATAGAGATAAGATATATCCTAGAGATAGAATCCTAGAG
ATAAGATAGAGTCCTAGAGATAGAATCCTAAAGATAAATCTACTCTTATTTGTATTGTACTCCAAGTCTCTATCCCCTAT
GTACTCCTATATATACCCCATGAGAGGGTCGATCCAATATATCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis