Browse Element(s) Details


OsAffx.17934.1.S1_at

Description tigr:9637.m02411
TID=OsAffx.17934.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g274908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27460NANA9+16680045..16680362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27470NANA9+16681896..16684189retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27480Os.29072.1.S1_at11/119+16695170..16696422expressed protein
LOC_Os09g27490OsAffx.17934.1.S1_at8/119+16703604..16708432hypothetical protein
LOC_Os09g27500Os.27525.2.S1_x_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27500Os.27525.1.A1_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27510Os.56907.1.S1_at9/119+16717632..16719922Cytochrome P450 family protein, expressed
LOC_Os09g27520OsAffx.30058.1.S1_at10/119+16727509..16728111hypothetical protein
LOC_Os09g27530OsAffx.6416.1.S1_at11/119+16729967..16730667hypothetical protein
LOC_Os09g27540OsAffx.30059.2.S1_x_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.30059.2.S1_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.21066.1.S1_x_at1/119+16732702..16737889C2 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17934.1.S1_at--883--1131Chr09:16703560..16703579 (20 bp)
AGTCTGTCGTCTCTTGGTAGTTACC
NONE
OsAffx.17934.1.S1_at--805--6931Chr09:16703571..16703595 (25 bp)
GTAGTTACCATTTCACACCGGGAGA
NONE
OsAffx.17934.1.S1_at--1012--1311Chr09:16703602..16703622 (21 bp)
AGATGGAGTCCTCGAACCAGGGAAA
NONE
OsAffx.17934.1.S1_at--337--2891Chr09:16703745..16703769 (25 bp)
AAGGTGAGGGACTTTGATCTGAACA
LOC_Os09g27490
OsAffx.17934.1.S1_at--1035--6391Chr09:16703760..16703784 (25 bp)
GATCTGAACAAGGAGCCCAGCCCAG
LOC_Os09g27490
OsAffx.17934.1.S1_at--144--9731Chr09:16705220..16705244 (25 bp)
TCAAGCAGGCTGACAATGCCTTGGT
LOC_Os09g27490
OsAffx.17934.1.S1_at--865--5951Chr09:16705576..16705599 (24 bp)
GAGCAATGTCCATTTCGTAGACACA
LOC_Os09g27490
OsAffx.17934.1.S1_at--592--5611Chr09:16705594..16705618 (25 bp)
GACACAGAGACTTACGTACAGTACA
LOC_Os09g27490
OsAffx.17934.1.S1_at--106--10131Chr09:16708291..16708315 (25 bp)
TATGCTCGAGCAAATGCAAGGCCGA
LOC_Os09g27490
OsAffx.17934.1.S1_at--929--2431Chr09:16708318..16708342 (25 bp)
AAAATGTTGTATGACCCTTGGGAGT
LOC_Os09g27490
OsAffx.17934.1.S1_at--953--2991Chr09:16708355..16708379 (25 bp)
AATGTTGACCTCGACATGGAGACAG
LOC_Os09g27490
Target Sequence 
AGTCTGTCGTCTCTTGGTAGTTACCATTTCACACCGGGAGAGGATGAAGATGGAGTCCTCGAACCAGGGAAAGAGGAAGG
TGAGGGACTTTGATCTGAACAAGGAGCCCAGCCCAGATCCAGTACCTGTAAACGCGGGGAAGGAGGCTGAGGGCAAGAAT
GTAATCAAGCAGGCTGACAATGCCTTGGTAGAGAAGAGCAATGTCCATTTCGTAGACACAGAGACTTACGTACAGTACAT
TGTCAAGTTGGATAACAAGTTCGATAGCAACCTAATGAAGAAAATACTGAGCGTCATTGAAGTATTCGAGCTTTGCAAGA
AGAAAGAACAAACGTACCAGAAAATTACAACAAATATGCTCGAGCAAATGCAAGGCCGAGAAAAATGTTGTATGACCCTT
GGGAGTTGGGAAGAATATAATGTTGACCTCGACATGGAGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis