Browse Element(s) Details


Os.27525.2.S1_x_at

Description gb:CB675967
DB_XREF= gi:29679692
DB_XREF=OSJNEe11P18.f
CLONE=OSJNEe11P18
TID=Os.27525.2
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27525 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein sp:O64636 (A.thaliana) C7C1_ARATH Cytochrome P450 76C1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2750011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27480Os.29072.1.S1_at11/119+16695170..16696422expressed protein
LOC_Os09g27490OsAffx.17934.1.S1_at8/119+16703604..16708432hypothetical protein
LOC_Os09g27500Os.27525.2.S1_x_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27500Os.27525.1.A1_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27510Os.56907.1.S1_at9/119+16717632..16719922Cytochrome P450 family protein, expressed
LOC_Os09g27520OsAffx.30058.1.S1_at10/119+16727509..16728111hypothetical protein
LOC_Os09g27530OsAffx.6416.1.S1_at11/119+16729967..16730667hypothetical protein
LOC_Os09g27540OsAffx.30059.2.S1_x_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.30059.2.S1_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.21066.1.S1_x_at1/119+16732702..16737889C2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27525.2.S1_x_at--188--1511Chr09:16712533..16712557 (25 bp)
AGCACGGCCCCGTGATGTCGCTCAA
LOC_Os09g27500
Os.27525.2.S1_x_at--805--8871Chr09:16712521..16712545 (25 bp)
TGATGTCGCTCAAGCTCGGCACGGC
LOC_Os09g27500
Os.27525.2.S1_x_at--498--4611Chr09:16712461..16712485 (25 bp)
GCGACGCCCTGCAGAGGTACGACCA
LOC_Os09g27500
Os.27525.2.S1_x_at--41--1311Chr09:16712449..16712473 (25 bp)
AGAGGTACGACCACGTCCTCGCGGC
LOC_Os09g27500
Os.27525.2.S1_x_at--475--1811Chr09:16712390..16712414 (25 bp)
ACCCACGAGCGGTCCATCGTATGGC
LOC_Os09g27500
Os.27525.2.S1_x_at--860--1851Chr09:16712386..16712410 (25 bp)
ACGAGCGGTCCATCGTATGGCTCCC
LOC_Os09g27500
Os.27525.2.S1_x_at--812--7771Chr09:16712380..16712404 (25 bp)
GGTCCATCGTATGGCTCCCCGGGAG
LOC_Os09g27500
Os.27525.2.S1_x_at--200--4471Chr09:16712338..16712362 (25 bp)
GCCTCCGCGCTGTGTGCACCAACCA
LOC_Os09g27500
Os.27525.2.S1_x_at--1107--8591Chr09:16712251..16712275 (25 bp)
TGGTCGAGCACCTCCGAGGGCACGC
LOC_Os09g27500
Os.27525.2.S1_x_at--448--4152Chr09:12506466..12506489 (23 bp)
CGCGTCGTGTTCTCGGCGGTCATCA
NONE
Os.27525.2.S1_x_at--521--991Chr09:16712065..16712089 (25 bp)
AGGAGGCCACCAAGCCGAACCTGTC
LOC_Os09g27500
Target Sequence 
AGCACGGCCCCGTGATGTCGCTCAAGCTCGGCACGGCCACCGCCGTGGTCGCCTCCTCCGCCGCGGCGGCGCGCGACGCC
CTGCAGAGGTACGACCACGTCCTCGCGGCGCGGGCGGTGTGCGACGCCGCCCGCGCGCTCGGCACCCACGAGCGGTCCAT
CGTATGGCTCCCCGGGAGCAGCGCGCTGTGGAAGCGCCTCCGCGCTGTGTGCACCAACCACCTCTTCTCCGCGCGCGGGC
TCGACGCGACGCGCGCCGTGCGGGAGGCGAAGGTGAGGGAGCTGGTCGAGCACCTCCGAGGGCACGCCGCCGGCGCCGGC
GAGGAGGAGGCGGCGGCCGTGGACGTCGGGCGCGTCGTGTTCTCGGCGGTCATCAACCTCNTCTCCAACGTGCTCTTCTC
CGAGGACGTCNCCGACCTGANCTCCGACCGGGCGCANGAGCTGGAGATGCTCGTCANGGACACNGTCGAGGAGGCCACCA
AGCCGAACCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27525.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis