Browse Element(s) Details


Os.27525.1.A1_at

Description gb:CB646469
DB_XREF= gi:29641462
DB_XREF=OSJNEb08P19.r
CLONE=OSJNEb08P19
TID=Os.27525.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27525 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein sp:O64636 (A.thaliana) C7C1_ARATH Cytochrome P450 76C1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2750011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27480Os.29072.1.S1_at11/119+16695170..16696422expressed protein
LOC_Os09g27490OsAffx.17934.1.S1_at8/119+16703604..16708432hypothetical protein
LOC_Os09g27500Os.27525.2.S1_x_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27500Os.27525.1.A1_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27510Os.56907.1.S1_at9/119+16717632..16719922Cytochrome P450 family protein, expressed
LOC_Os09g27520OsAffx.30058.1.S1_at10/119+16727509..16728111hypothetical protein
LOC_Os09g27530OsAffx.6416.1.S1_at11/119+16729967..16730667hypothetical protein
LOC_Os09g27540OsAffx.30059.2.S1_x_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.30059.2.S1_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.21066.1.S1_x_at1/119+16732702..16737889C2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27525.1.A1_at--250--9711Chr09:16710301..16710325 (25 bp)
TCAACATGGTCACGCCGCTCAAGGC
LOC_Os09g27500
Os.27525.1.A1_at--1110--1651Chr09:16710258..16710282 (25 bp)
AGCGCGCCCGTGATGCGATTCTGCC
LOC_Os09g27500
Os.27525.1.A1_at--635--4531Chr09:16710236..16710260 (25 bp)
GCCCGTGTCGGTTAAGAGGCAGATC
LOC_Os09g27500
Os.27525.1.A1_at--565--6531Chr09:16710192..16710216 (25 bp)
GATTTAGAATTGCTTCGTCCACCTC
LOC_Os09g27500
Os.27525.1.A1_at--708--1271Chr09:16710150..16710174 (25 bp)
AGATGAATGAAATATACTACCTCCG
LOC_Os09g27500
Os.27525.1.A1_at--977--1371Chr09:16709978..16710002 (25 bp)
AGACCAGTAGTTTATCCATTCAAAG
LOC_Os09g27500
Os.27525.1.A1_at--835--7371Chr09:16709931..16709955 (25 bp)
GTGGGTGACAAAGTTACAAGGCTAA
LOC_Os09g27500
Os.27525.1.A1_at--226--2971Chr09:16709906..16709930 (25 bp)
AATGGAACCTGTGTCCTGTCACAAA
LOC_Os09g27500
Os.27525.1.A1_at--1096--5491Chr09:16709879..16709903 (25 bp)
GAACAAAACTTGTCGGGCCACATGA
LOC_Os09g27500
Os.27525.1.A1_at--822--7551Chr09:16709865..16709889 (25 bp)
GGGCCACATGAAGTTGAAGCCTATG
LOC_Os09g27500
Os.27525.1.A1_at--825--5311Chr09:16709850..16709874 (25 bp)
GAAGCCTATGGTGATTGATTGGGTA
LOC_Os09g27500
Target Sequence 
TCAACATGGTCACGCCGCTCAAGGCCGTGCCGGTGCCGGTGCCAGCGCGCCCGTGATGCGATTCTGCCCGTGTCGGTTAA
GAGGCAGATCGATCGATCCAGCTGGGGGTGATTTAGAATTGCTTCGTCCACCTCAAAATATAAATGATTTTAGATGAATG
AAATATACTACCTCCGTTTTAGGTTATAAAACTTTTTAATATTGTCCACATTCATATAGATGTTAATGAATCTAGGCACC
TATATATGAATGTAGACAATGCTAGAAAATNTTATAATATAAANCAGATAAAGTATTTTAGTACTANNNANNAATCTCAA
ATCAGACCAGTAGTTTATCCATTCAAAGTTTGATGAATGATGGTGATAGAGTGGGTGACAAAGTTACAAGGCTAAAATGG
AACCTGTGTCCTGTCACAAATGGAACAAAACTTGTCGGGCCACATGAAGTTGAAGCCTATGGTGATTGATTGGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27525.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis