Browse Element(s) Details


OsAffx.21066.1.S1_x_at

Description gb:NM_194204.1
DB_XREF= gi:34915445
GEN=P0022B05.36
TID=OsAffx.21066.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (P0022B05.36), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g152403/11expressed protein
LOC_Os07g255702/11hypothetical protein
LOC_Os03g320501/11Peroxidase 2 precursor, putative, expressed
LOC_Os09g275401/11C2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15190OsAffx.26904.1.S1_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.26904.1.S1_x_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.29316.1.S1_x_at2/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.20927.2.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_x_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15200NANA5+8606261..8608023Zinc knuckle family protein
LOC_Os05g15210NANA5+8609337..8611693retrotransposon protein, putative, unclassified
LOC_Os05g15220NANA5+8612544..8617644retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15230Os.54939.1.S1_at11/115+8619474..8621547expressed protein
LOC_Os05g15240OsAffx.21066.1.S1_x_at3/115+8623190..8626815expressed protein
LOC_Os05g15240Os.27004.1.A1_at2/115+8623190..8626815expressed protein
LOC_Os05g15240OsAffx.9772.1.S1_at1/115+8623190..8626815expressed protein
LOC_Os05g15250OsAffx.19542.3.S1_x_at3/115+8628495..8632701retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g15260OsAffx.4344.1.S1_at11/115+8634354..8635570hypothetical protein
LOC_Os05g15270Os.36426.1.S1_at1/115+8635965..8642312retrotransposon protein, putative, unclassified
LOC_Os05g15270OsAffx.199.1.S1_at1/115+8635965..8642312retrotransposon protein, putative, unclassified
LOC_Os05g15280OsAffx.20877.1.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280Os.48015.1.A1_x_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280OsAffx.10665.2.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15290NANA5+8649347..8651906retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21066.1.S1_x_at--969--2713Chr09:12878554..12878671 (25 bp)
AAGCAGCAGGACAGACGACGGCCTC
NONE
OsAffx.21066.1.S1_x_at--334--1532Chr09:12878558..12878698 (25 bp)
AGCAGGACAGACGACGGCCTCGGCT
NONE
OsAffx.21066.1.S1_x_at--88--5012Chr09:12878559..12878699 (25 bp)
GCAGGACAGACGACGGCCTCGGCTC
NONE
OsAffx.21066.1.S1_x_at--323--3371Chr07:1123321..1123345 (25 bp)
CACCTCCTCTGTTCACCAAGAGAGA
NONE
OsAffx.21066.1.S1_x_at--1042--1751Chr07:1123320..1123344 (25 bp)
ACCTCCTCTGTTCACCAAGAGAGAG
NONE
OsAffx.21066.1.S1_x_at--1009--4272Chr08:1245347..1245422 (25 bp)
CCTCCTCTGTTCACCAAGAGAGAGA
NONE
OsAffx.21066.1.S1_x_at--55--9273Chr06:24463323..24463342 (20 bp)
TCCTCTGTTCACCAAGAGAGAGAGA
NONE
OsAffx.21066.1.S1_x_at--331--4291Chr07:1123316..1123340 (25 bp)
CCTCTGTTCACCAAGAGAGAGAGAG
NONE
OsAffx.21066.1.S1_x_at--481--10379Chr08:10642414..10642449 (24 bp)
TTTTTTCTGACTGTATCGCCACGTA
NONE
OsAffx.21066.1.S1_x_at--512--57316Chr10:767248..767283 (25 bp)
GACTGTATCGCCACGTAGGCTGAAA
NONE
OsAffx.21066.1.S1_x_at--982--43919Chr10:767268..767292 (25 bp)
GCCACGTAGGCTGAAAACCGCTTCG
NONE
Target Sequence 
AAGCAGCAGGACAGACGACGGCCTCGGCTCCTCTCCCGTCGCCCGTTGCCCGCAGCCTCCTCCGTCGCCGCCCGTCACAC
GCAGCCGCCTTCGCCCTCACCCACCGCTTGCCGCCCGCCCCGGCCACGGCTCCTCGCCCTTGCCCACCAGCCACCTCCTC
TGTTCACCAAGAGAGAGAGAGGGGGGGCAGAGAAGGAGTTTTTATTTGTTTTTTCTGACTGTATCGCCACGTAGGCTGAA
AACCGCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21066.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis