Browse Element(s) Details


Os.27004.1.A1_at

Description gb:CB632992
DB_XREF= gi:29627981
DB_XREF=OSIIEb11J05.r
CLONE=OSIIEb11J05
TID=Os.27004.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27004 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g152402/11expressed protein
LOC_Os06g322202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g116301/11hypothetical protein
LOC_Os05g164101/11hypothetical protein
LOC_Os04g284501/11hypothetical protein
LOC_Os06g319901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g259101/11hypothetical protein
LOC_Os05g204301/11transposon protein, putative, unclassified
LOC_Os10g216901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15190OsAffx.26904.1.S1_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.26904.1.S1_x_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.29316.1.S1_x_at2/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.20927.2.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_x_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15200NANA5+8606261..8608023Zinc knuckle family protein
LOC_Os05g15210NANA5+8609337..8611693retrotransposon protein, putative, unclassified
LOC_Os05g15220NANA5+8612544..8617644retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15230Os.54939.1.S1_at11/115+8619474..8621547expressed protein
LOC_Os05g15240OsAffx.21066.1.S1_x_at3/115+8623190..8626815expressed protein
LOC_Os05g15240Os.27004.1.A1_at2/115+8623190..8626815expressed protein
LOC_Os05g15240OsAffx.9772.1.S1_at1/115+8623190..8626815expressed protein
LOC_Os05g15250OsAffx.19542.3.S1_x_at3/115+8628495..8632701retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g15260OsAffx.4344.1.S1_at11/115+8634354..8635570hypothetical protein
LOC_Os05g15270Os.36426.1.S1_at1/115+8635965..8642312retrotransposon protein, putative, unclassified
LOC_Os05g15270OsAffx.199.1.S1_at1/115+8635965..8642312retrotransposon protein, putative, unclassified
LOC_Os05g15280OsAffx.20877.1.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280Os.48015.1.A1_x_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280OsAffx.10665.2.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15290NANA5+8649347..8651906retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27004.1.A1_at--1011--4252Chr05:7281711..7281730 (20 bp)
CCTCCGAACAATCAGGACGCGTTTA
NONE
Os.27004.1.A1_at--147--5811Chr04:15645188..15645305 (25 bp)
GACGCGTTTACACAGATTGGAGGCC
NONE
Os.27004.1.A1_at--547--3191Chr11:8075132..8075156 (25 bp)
CAATAAGCAACCTCCCAGCTGAAGG
NONE
Os.27004.1.A1_at--508--4892Chr11:8075217..8075241 (25 bp)
GCTTTCACGTGGACAGCCCTGATTA
NONE
Os.27004.1.A1_at--164--4551Chr11:8075232..8075256 (25 bp)
GCCCTGATTACTCCCTAATGATGGT
NONE
Os.27004.1.A1_at--533--7851Chr11:8075262..8075286 (25 bp)
GGTATTTTTGTCATTTCCCATGGCT
NONE
Os.27004.1.A1_at--1009--7111NONE
GTCATTTCCCATGGCTATAACTACC
NONE
Os.27004.1.A1_at--1092--971Chr11:8075315..8075339 (25 bp)
AGGAGAGGCTCTCGTTCCAAAACAC
NONE
Os.27004.1.A1_at--168--13393Chr12:10699403..10699427 (25 bp)
AGAGGCTCTATTGTATCTTTTGTAC
NONE
Os.27004.1.A1_at--544--4296Chr08:6392725..6392744 (20 bp)
CCTCAACGAGTGTAGCTTTCTTTCT
NONE
Os.27004.1.A1_at--770--11759Chr12:13973716..13973740 (25 bp)
AGTACCGGAGCTGTCGGTACACTCT
NONE
Target Sequence 
CCTCCGAACAATCAGGACGCGTTTACACAGATTGGAGGCCCAATAAGTCAATAAAAACAACTTAGAATTGGACCAAAACA
TAGTACATAATGTTAGGGGCCCAATAAGCAACCTCCCAGCTGAAGGAGAGGCCAGGAGGAGTGTTTTTGGGTTCGACCGA
ACCCTTCCTGGCGCATCCCGCCATCTGCTTTCACGTGGACAGCCCTGATTACTCCCTAATGATGGTTGAAGGGTATTTTT
GTCATTTCCCATGGCTATAACTACCATCTGGAGCCTATAAAAGGAGGAGAGGCTCTCGTTCCAAAACACACAACTTTGAG
CTGAATTACAAGAGGCTCTATTGTATCTTTTGTACATTAGAAAATAGGTAGAGAGTGAGGAGAAACTCTGGAGAAGTGCC
CGGAAGTTTGGCGCTCTCTCCGACTTCTACCTCAACGAGTGTAGCTTTCTTTCTATGAGGAATTCTAGAGGAGTACCGGA
GCTGTCGGTACACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27004.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis