Browse Element(s) Details


OsAffx.10665.2.S1_at

Description gb:NM_183877.1
DB_XREF= gi:34894881
GEN=B1140D12.3
TID=OsAffx.10665.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1140D12.3 (B1140D12.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g108501/11retrotransposon protein, putative, unclassified
LOC_Os05g187801/11Rpp14 family protein, expressed
LOC_Os07g050201/11expressed protein
LOC_Os06g064801/11Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os11g243001/11hypothetical protein
LOC_Os03g415401/11hypothetical protein
LOC_Os05g152801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10830Os.10561.1.S1_at11/117+5883650..5888229Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit containing protein, expressed
LOC_Os07g10840Os.18257.1.S1_at11/117+5888859..5892428seed imbibition protein, putative, expressed
LOC_Os07g10850Os.33878.1.S1_at6/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.55138.1.S1_x_at2/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10665.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.36409.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.27102.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.15501.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.30445.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10860OsAffx.28395.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.25087.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.33702.1.S1_x_at1/117+5929313..5937569hypothetical protein
LOC_Os07g10870OsAffx.28397.2.S1_at11/117+5940174..5942039hypothetical protein
LOC_Os07g10880Os.17458.1.S1_at11/117+5943031..5944507expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0008033biological_processtRNA processing
GO:0008615biological_processpyridoxine biosynthesis
GO:0042819biological_processvitamin B6 biosynthesis
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0012505cellular_componentendomembrane system
GO:0003677molecular_functionDNA binding
GO:0004526molecular_functionribonuclease P activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10665.2.S1_at--1082--3071Chr01:12872215..12872235 (21 bp)
AATCACCCTCAATTTCCACAGAGAA
NONE
OsAffx.10665.2.S1_at--817--9771Chr01:12873724..12873748 (25 bp)
TAGAGGAGAACCAGGACCATTTACC
NONE
OsAffx.10665.2.S1_at--683--4274Chr10:15703057..15703260 (25 bp)
CCTCTCCGTCCTTTGAAGAAATCGA
NONE
OsAffx.10665.2.S1_at--69--5871Chr01:12873938..12873962 (25 bp)
GAGCCATCGTTGTTCATCCAAGGTG
NONE
OsAffx.10665.2.S1_at--909--2891Chr01:12873957..12873981 (25 bp)
AAGGTGAAGCGCCACTGCCGAGACA
NONE
OsAffx.10665.2.S1_at--345--5991Chr01:12873976..12874000 (25 bp)
GAGACATTTCGCGAGCCATCGTCGA
NONE
OsAffx.10665.2.S1_at--485--513Chr09:20225002..20225117 (25 bp)
ATCGTCGACGACCAAGCTTGGCCGA
NONE
OsAffx.10665.2.S1_at--510--4671Chr01:12874061..12874085 (25 bp)
GCGGTGAACCCCTGCGATGCGACGC
NONE
OsAffx.10665.2.S1_at--870--6191Chr01:12874165..12874301 (25 bp)
GAGGAAGAACATGCCCACGAGCAAA
NONE
OsAffx.10665.2.S1_at--419--30937Chr12:9283152..9283175 (24 bp)
AATACACGATCTTCGGGTGTCTCAT
NONE
OsAffx.10665.2.S1_at--351--7751Chr01:12874315..12874339 (25 bp)
GGTGTCTCATAGCAAAGGTCGCAAT
NONE
Target Sequence 
AATCACCCTCAATTTCCACAGAGAATCAGCCCAAAACTCTGAGAAATGGATAGAGGAGAACCAGGACCATTTACCCCCAA
GTACCCCACCCAATGGCGCAGCGATCTTGGAGATCGGCATCATCTTCTCCAACTCCGGCCGCCGAGCTCCATCTTCGATT
TCTCCCTCTCCGTCCTTTGAAGAAATCGAGCCATCGTTGTTCATCCAAGGTGAAGCGCCACTGCCGAGACATTTCGCGAG
CCATCGTCGACGACCAAGCTTGGCCGACCTCATCCGTGCGCCAGGATGCCGCCGTGCGTCATCACCGTCGGCGGTGAACC
CCTGCGATGCGACGCTGCCCCGCCGTGGCCGAGCCATCCCGGCTCGGGCCAGCCGCCGTCGCGAGGAAGAATGGGGAAAA
GAAAAGAAGAGAGAGAGGAAGAACATGCCCACGAGCAAATACACGATCTTCGGGTGTCTCATAGCAAAGGTCGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10665.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis