Browse Element(s) Details


OsAffx.28395.1.S1_at

Description tigr:9635.m01056
TID=OsAffx.28395.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1086011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10850Os.33878.1.S1_at6/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.55138.1.S1_x_at2/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10665.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.36409.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.27102.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.15501.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.30445.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10860OsAffx.28395.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.25087.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.33702.1.S1_x_at1/117+5929313..5937569hypothetical protein
LOC_Os07g10870OsAffx.28397.2.S1_at11/117+5940174..5942039hypothetical protein
LOC_Os07g10880Os.17458.1.S1_at11/117+5943031..5944507expressed protein
LOC_Os07g10890Os.38857.1.S1_a_at11/117+5949034..5953989HALF-1 transcription factor, putative, expressed
LOC_Os07g10890OsAffx.16202.1.S1_at9/117+5949034..5953989HALF-1 transcription factor, putative, expressed
LOC_Os07g10900Os.2987.3.S1_x_at2/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8980.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8272.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0009411biological_processresponse to UV
GO:0016035cellular_componentzeta DNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003894molecular_functionzeta DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28395.1.S1_at--1099--351Chr07:5933084..5933108 (25 bp)
ATAATATTCCTCAGCTTGATGGGTC
LOC_Os07g10860
OsAffx.28395.1.S1_at--378--231Chr07:5933087..5933111 (25 bp)
ATATTCCTCAGCTTGATGGGTCATC
LOC_Os07g10860
OsAffx.28395.1.S1_at--1122--1291Chr07:5933288..5933308 (21 bp)
AGATGACGGTGCGATGCCAACTGAG
LOC_Os07g10860
OsAffx.28395.1.S1_at--341--8931Chr07:5933288..5933311 (24 bp)
TGACGGTGCGATGCCAACTGAGAAG
LOC_Os07g10860
OsAffx.28395.1.S1_at--29--4371Chr07:5933300..5933324 (25 bp)
CCAACTGAGAAGGAACCAAGTGTTT
LOC_Os07g10860
OsAffx.28395.1.S1_at--14--8191Chr07:5933311..5933335 (25 bp)
GGAACCAAGTGTTTCTTTCATGAGT
LOC_Os07g10860
OsAffx.28395.1.S1_at--99--3231Chr07:5933316..5933340 (25 bp)
CAAGTGTTTCTTTCATGAGTAGAAC
LOC_Os07g10860
OsAffx.28395.1.S1_at--88--5471Chr07:5933347..5933371 (25 bp)
GAACTCCCATGCTACCACAGATAAG
LOC_Os07g10860
OsAffx.28395.1.S1_at--135--9331Chr07:5933351..5933375 (25 bp)
TCCCATGCTACCACAGATAAGACTG
LOC_Os07g10860
OsAffx.28395.1.S1_at--187--9091Chr07:5933356..5933380 (25 bp)
TGCTACCACAGATAAGACTGGCAGG
LOC_Os07g10860
OsAffx.28395.1.S1_at--722--7611Chr07:5933379..5933399 (21 bp)
GGGAATCTTTTAGTCGATCAGATAT
LOC_Os07g10860
Target Sequence 
ATAATATTCCTCAGCTTGATGGGTCATCTGATGAAAACCAGGAAGTTCCACAAGAAGATGACGGTGCGATGCCAACTGAG
AAGGAACCAAGTGTTTCTTTCATGAGTAGAACTGGAAAGAACTCCCATGCTACCACAGATAAGACTGGCAGGGAATCTTT
TAGTCGATCAGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis