Browse Element(s) Details


OsAffx.10733.1.S1_x_at

Description gb:NM_183576.1
DB_XREF= gi:34894279
TID=OsAffx.10733.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g476601/11Lipid phosphate phosphatase 2, putative, expressed
LOC_Os07g108501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47620OsAffx.27354.1.S1_at11/115+27202157..27203310hypothetical protein
LOC_Os05g47630Os.7968.1.S1_at4/115+27203909..27206342peptidyl-tRNA hydrolase family protein, expressed
LOC_Os05g47640Os.9175.1.S1_at11/115+27207287..27209237Threonine synthase, chloroplast precursor, putative, expressed
LOC_Os05g47650OsAffx.15137.1.S1_at11/115+27219714..27221293DNA-binding protein RAV1, putative, expressed
LOC_Os05g47660OsAffx.15138.1.S1_at11/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_x_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.26910.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47670Os.20644.1.S1_at11/115+27234153..27237274Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g47680NANA5+27237302..27239600hypothetical protein
LOC_Os05g47690NANA5+27240420..27241809Reticulon family protein, expressed
LOC_Os05g47700Os.6664.1.S1_at11/115+27247373..27248076nonspecific lipid-transfer protein AKCS9 precursor, putative, expressed
LOC_Os05g47710NANA5+27249002..27254125transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006644biological_processphospholipid metabolism
GO:0006950biological_processresponse to stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0005887cellular_componentintegral to plasma membrane
GO:0008195molecular_functionphosphatidate phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10733.1.S1_x_at--588--5951Chr01:10393888..10393912 (25 bp)
GAGCAATTCCCTCACTCTCAACGGG
NONE
OsAffx.10733.1.S1_x_at--895--9511Chr01:10393873..10393897 (25 bp)
TCTCAACGGGCTCTGTCTCCATGCG
NONE
OsAffx.10733.1.S1_x_at--918--3351Chr01:10393823..10393847 (25 bp)
CACCGATGGTAAAGGGCGACGACGT
NONE
OsAffx.10733.1.S1_x_at--203--4151Chr01:10393773..10393797 (25 bp)
CGCGGAGGCGTTAGGGCTGGCTCTC
NONE
OsAffx.10733.1.S1_x_at--489--9491Chr01:10393744..10393768 (25 bp)
TCTGCCGCCGCTGTCAGAAGAGAAG
NONE
OsAffx.10733.1.S1_x_at--356--2431Chr01:10393694..10393718 (25 bp)
AAAACCAATGGTGGAGGGCGACAGA
NONE
OsAffx.10733.1.S1_x_at--309--3551Chr01:10393595..10393619 (25 bp)
CATCTGCCGCCATTGTCAGAAGAGA
NONE
OsAffx.10733.1.S1_x_at--120--2359Chr06:7845233..7845345 (25 bp)
AAAGAAAGGATGTCACGTCAGCGAA
NONE
OsAffx.10733.1.S1_x_at--697--9652Chr02:32702375..32702399 (25 bp)
TCAGCGAAACCGGATATCCATACTG
NONE
OsAffx.10733.1.S1_x_at--404--5552Chr02:32702372..32702394 (23 bp)
GAAACCGGATATCCATACTGCTATG
NONE
OsAffx.10733.1.S1_x_at--117--4872Chr04:19612639..19612663 (25 bp)
GCTATGGGACCTAAAATGCACAGTT
NONE
Target Sequence 
GAGCAATTCCCTCACTCTCAACGGGCTCTGTCTCCATGCGCGCCGCGCCGAGATCGTGAGGAGGGCACCGATGGTAAAGG
GCGACGACGTCATCGCCGCCGACGAGGCCGAGCGGCGCGGAGGCGTTAGGGCTGGCTCTCCCCATCTGCCGCCGCTGTCA
GAAGAGAAGAAAGTAAAAAAAAAGGAGAAGAAAGAAAACCAATGGTGGAGGGCGACAGAGGCCACCGCCGCCGATGAGGC
TGAGCGGCGTGAAGGCGTCGGGCCGCTCAGCCTCATCGGCGGCCGGCTCTCCCCATCTGCCGCCATTGTCAGAAGAGAAG
AAAATAAAAAAAAAACAAATAGATGTAAGAAAAAAGGGGAAGAAAAAAGAAAGGATGTCACGTCAGCGAAACCGGATATC
CATACTGCTATGGGACCTAAAATGCACAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10733.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis