Browse Element(s) Details


Os.20644.1.S1_at

Description gb:CB655201
DB_XREF= gi:29658926
DB_XREF=OSJNEc08F23.r
CLONE=OSJNEc08F23
TID=Os.20644.1
CNT=11
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.20644 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_175132.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4767011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47640Os.9175.1.S1_at11/115+27207287..27209237Threonine synthase, chloroplast precursor, putative, expressed
LOC_Os05g47650OsAffx.15137.1.S1_at11/115+27219714..27221293DNA-binding protein RAV1, putative, expressed
LOC_Os05g47660OsAffx.15138.1.S1_at11/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_x_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.26910.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47670Os.20644.1.S1_at11/115+27234153..27237274Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g47680NANA5+27237302..27239600hypothetical protein
LOC_Os05g47690NANA5+27240420..27241809Reticulon family protein, expressed
LOC_Os05g47700Os.6664.1.S1_at11/115+27247373..27248076nonspecific lipid-transfer protein AKCS9 precursor, putative, expressed
LOC_Os05g47710NANA5+27249002..27254125transposon protein, putative, Mutator sub-class
LOC_Os05g47720Os.35344.3.S1_x_at10/115+27256760..27259473hypothetical protein
LOC_Os05g47720Os.35344.18.S1_x_at9/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.2.S1_s_at6/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.3.S1_x_at5/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.5.S1_x_at4/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.32051.1.S1_x_at1/115+27256760..27259473hypothetical protein
LOC_Os05g47720OsAffx.22940.1.S1_s_at1/115+27256760..27259473hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20644.1.S1_at--416--6311Chr05:27236664..27236688 (25 bp)
GATGAAATCGCTCGCAGCCTTAGGA
LOC_Os05g47670
Os.20644.1.S1_at--653--9671Chr05:27236692..27236716 (25 bp)
TCAAGTATTCAGCATTCAACCCCAA
LOC_Os05g47670
Os.20644.1.S1_at--634--2132Chr05:27236871..27236895 (25 bp)
ACAGGGAGGCTGATCTGTGGCCACA
LOC_Os05g47670
Os.20644.1.S1_at--1085--8652Chr05:27236886..27236910 (25 bp)
TGTGGCCACAGCTATCATGTGCAAT
LOC_Os05g47670
Os.20644.1.S1_at--631--10312Chr05:27236926..27236950 (25 bp)
TTTCTAGGAAGAACACCTGCCCTGT
LOC_Os05g47670
Os.20644.1.S1_at--654--3812Chr05:27236942..27236966 (25 bp)
CTGCCCTGTCTGCAAAACTGTTGTA
LOC_Os05g47670
Os.20644.1.S1_at--911--3072Chr05:27236984..27237008 (25 bp)
AATCAGTCCCTAAGCACACTTGAAC
LOC_Os05g47670
Os.20644.1.S1_at--518--8131Chr05:27237024..27237048 (25 bp)
GGACTTACTCTTTCACAGTGTTTGT
LOC_Os05g47670
Os.20644.1.S1_at--104--2672Chr05:27237095..27237119 (25 bp)
AAGCCTGAAGCAAACCATCTCATTT
LOC_Os05g47670
Os.20644.1.S1_at--184--10332Chr05:27237131..27237155 (25 bp)
TTTACATGTTTTCAGTTTTCCCAGT
LOC_Os05g47670
Os.20644.1.S1_at--847--3652Chr05:27237189..27237213 (25 bp)
CTTACATGTTTTCAGTTTTCCCAGT
LOC_Os05g47670
Target Sequence 
GATGAAATCGCTCGCAGCCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAA
TTGCAGTATTTGTCAGGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCTATCATGTGCAAT
GCATAAAGCAGTGGCTTTCTAGGAAGAACACCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCCAATCAGT
CCCTAAGCACACTTGAACTGAAAATTGTGAAAAGGACTTACTCTTTCACAGTGTTTGTTTGTGATTGTACAGCTCTGTTT
GTACATGATGCTTTGTGTAAGCACAAGCCTGAAGCAAACCATCTCATTTGCATATAGAAATTTACATGTTTTCAGTTTTC
CCAGTGTCTACTGAGTGTTAAGCATTTGCTTGTAGAAACTTACATGTTTTCAGTTTTCCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis