Browse Element(s) Details


OsAffx.32051.1.S1_x_at

Description tigr:9640.m03499
TID=OsAffx.32051.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g361308/11hypothetical protein
LOC_Os01g094001/11transposon protein, putative, unclassified
LOC_Os12g101201/11hypothetical protein
LOC_Os05g477201/11hypothetical protein
LOC_Os05g518701/11hypothetical protein
LOC_Os12g101001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36100Os.52203.1.S1_at6/1112+22093425..22099482kinesin motor protein, putative, expressed
LOC_Os12g36110Os.15688.2.S1_x_at11/1112+22099883..22103438calmodulin-binding protein, putative, expressed
LOC_Os12g36110Os.15688.1.S1_at11/1112+22099883..22103438calmodulin-binding protein, putative, expressed
LOC_Os12g36120NANA12+22110194..22113212retrotransposon protein, putative, unclassified
LOC_Os12g36130OsAffx.32051.1.S1_x_at8/1112+22116085..22117073hypothetical protein
LOC_Os12g36140OsAffx.20387.1.S1_x_at1/1112+22118132..22120811transposon protein, putative, unclassified
LOC_Os12g36150NANA12+22121127..22123877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g36160OsAffx.7804.1.S1_at11/1112+22127940..22128995hypothetical protein
LOC_Os12g36170Os.53964.1.S1_at11/1112+22130214..22136367G14587-6, putative, expressed
LOC_Os12g36180Os.10153.1.S2_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.10153.1.S1_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.54204.1.S1_at1/1112+22139829..22147027expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32051.1.S1_x_at--194--5078Chr12:22116385..22116409 (25 bp)
GCAGCGGGACGGGCGCGGCTCGGCA
LOC_Os12g36130
OsAffx.32051.1.S1_x_at--25--1871NONE
ACGACGACGAATGTTACAGCCGAGA
NONE
OsAffx.32051.1.S1_x_at--429--4091NONE
CGACGACGAATGTTACAGCCGAGAA
NONE
OsAffx.32051.1.S1_x_at--126--5791NONE
GACGACGAATGTTACAGCCGAGAAG
NONE
OsAffx.32051.1.S1_x_at--132--1871Chr12:22117016..22117035 (20 bp)
ACGACGAATGTTACAGCCGAGAAGA
LOC_Os12g36130
OsAffx.32051.1.S1_x_at--108--4091Chr12:22117016..22117036 (21 bp)
CGACGAATGTTACAGCCGAGAAGAT
LOC_Os12g36130
OsAffx.32051.1.S1_x_at--516--5791Chr12:22117016..22117037 (22 bp)
GACGAATGTTACAGCCGAGAAGATC
LOC_Os12g36130
OsAffx.32051.1.S1_x_at--1130--1831Chr12:22117016..22117038 (23 bp)
ACGAATGTTACAGCCGAGAAGATCT
LOC_Os12g36130
OsAffx.32051.1.S1_x_at--567--4111Chr12:22117016..22117039 (24 bp)
CGAATGTTACAGCCGAGAAGATCTT
LOC_Os12g36130
OsAffx.32051.1.S1_x_at--898--5271Chr12:22117016..22117040 (25 bp)
GAATGTTACAGCCGAGAAGATCTTC
LOC_Os12g36130
OsAffx.32051.1.S1_x_at--835--2971Chr12:22117017..22117041 (25 bp)
AATGTTACAGCCGAGAAGATCTTCC
LOC_Os12g36130
Target Sequence 
GCAGCGGGACGGGCGCGGCTCGGCACGGGGCTCGACGCGACGACGACGAATGTTACAGCCGAGAAGATCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32051.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis