Browse Element(s) Details


Os.10153.1.S2_at

Description gb:AK072993.1
DB_XREF= gi:32983016
TID=Os.10153.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146P12, full insert sequence.
FL= gb:AK103433.1 gb:AK072993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3618011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36130OsAffx.32051.1.S1_x_at8/1112+22116085..22117073hypothetical protein
LOC_Os12g36140OsAffx.20387.1.S1_x_at1/1112+22118132..22120811transposon protein, putative, unclassified
LOC_Os12g36150NANA12+22121127..22123877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g36160OsAffx.7804.1.S1_at11/1112+22127940..22128995hypothetical protein
LOC_Os12g36170Os.53964.1.S1_at11/1112+22130214..22136367G14587-6, putative, expressed
LOC_Os12g36180Os.10153.1.S2_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.10153.1.S1_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.54204.1.S1_at1/1112+22139829..22147027expressed protein
LOC_Os12g36194Os.5218.1.S1_at11/1112+22149447..22156123Nucleoside diphosphate kinase 2, chloroplast precursor, putative, expressed
LOC_Os12g36210NANA12+22159870..22160378Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36220Os.9273.1.S1_x_at9/1112+22164073..22164918MPI, putative
LOC_Os12g36230Os.52447.1.S1_x_at1/1112+22167689..22168066retrotransposon, putative, centromere-specific
LOC_Os12g36240Os.9169.1.S1_x_at10/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36240Os.9273.1.S1_x_at1/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10153.1.S2_at--277--1311Chr12:22140371..22140395 (25 bp)
AGAGGAACTCTTCTAAACGGCCTGC
LOC_Os12g36180
Os.10153.1.S2_at--248--7491Chr12:22140296..22140320 (25 bp)
GTGGGACAGCACCTCATAGAACAAC
LOC_Os12g36180
Os.10153.1.S2_at--915--7171Chr12:22140255..22140279 (25 bp)
GTCGGCGGACCCATGAAACGATGAA
LOC_Os12g36180
Os.10153.1.S2_at--628--6811Chr12:22140180..22140204 (25 bp)
GTTTTATTATACACCCTCATCTTCT
LOC_Os12g36180
Os.10153.1.S2_at--461--10591Chr12:22140159..22140183 (25 bp)
TTCTCCCTTCTGTATGTGTTGATTC
LOC_Os12g36180
Os.10153.1.S2_at--21--691Chr12:22140132..22140156 (25 bp)
ATGACATTTCACAGCCACATGTGGT
LOC_Os12g36180
Os.10153.1.S2_at--210--5051Chr12:22140098..22140122 (25 bp)
GCAGACCCTCATCCAGTAGGTGTAT
LOC_Os12g36180
Os.10153.1.S2_at--592--151Chr12:22140073..22140097 (25 bp)
ATTAGCGTTCTTTTTGCTCGGTTGA
LOC_Os12g36180
Os.10153.1.S2_at--472--10351Chr12:22139984..22140008 (25 bp)
TTTATTTACCATGGAGGGCCCAAAT
LOC_Os12g36180
Os.10153.1.S2_at--406--9191Chr12:22139930..22139954 (25 bp)
TGCCATGGGCTTTTCGTAAGTTCAA
LOC_Os12g36180
Os.10153.1.S2_at--334--6291Chr12:22139866..22139890 (25 bp)
GATGTTCCTCTGATTCCTGTGTGAT
LOC_Os12g36180
Target Sequence 
AGAGGAACTCTTCTAAACGGCCTGCNGCAAATGNAAACATATTGCTCACCAATCTTCACCTGCATGAGNCAATCGGGGTG
GGACAGCACCTCATAGAACAACCGAGCTGGAGCNAGTCGGTCGGCGGACCCATGAAACGATGAAGNGAAAGTTCCACCAT
AATTACAATTGTATTGTTATTACCAATATTGTTTGTTTTATTATACACCCTCATCTTCTCCCTTCTGTATGTGTTGATTC
AAATGACATTTCACAGCCACATGTGGTGGCCCTGCGGCAGACCCTCATCCAGTAGGTGTATATTAGCGTTCTTTTTGCTC
GGTTGATCCAGGGTTGTGTAGCAGCGGATTTGGGGTGGCCAGTGTTGTGGTTTTTGGATTAGGCACAGGGTTTATTTACC
ATGGAGGGCCCAAATTGCATGGATCATGAATGTTGCCAGTTTGNTGCCATGGGCTTTTCGTAAGTTCAATTATCTTGTTT
ATAGTGAACTTCTGGAACACACATTGGGGATGTTCCTCTGATTCCTGTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10153.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis