Browse Element(s) Details


Os.9169.1.S1_x_at

Description gb:AK058739.1
DB_XREF= gi:32968757
TID=Os.9169.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.9169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-G06, full insert sequence.
FL= gb:AK058739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3624010/11Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36180Os.10153.1.S2_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.10153.1.S1_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.54204.1.S1_at1/1112+22139829..22147027expressed protein
LOC_Os12g36194Os.5218.1.S1_at11/1112+22149447..22156123Nucleoside diphosphate kinase 2, chloroplast precursor, putative, expressed
LOC_Os12g36210NANA12+22159870..22160378Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36220Os.9273.1.S1_x_at9/1112+22164073..22164918MPI, putative
LOC_Os12g36230Os.52447.1.S1_x_at1/1112+22167689..22168066retrotransposon, putative, centromere-specific
LOC_Os12g36240Os.9169.1.S1_x_at10/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36240Os.9273.1.S1_x_at1/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36250NANA12+22172827..22173273retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36260NANA12+22174374..22178732retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36270Os.17439.1.S1_at11/1112+22180505..22185525expressed protein
LOC_Os12g36300OsAffx.7806.1.S1_at11/1112+22192757..22193038hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9169.1.S1_x_at--848--9511Chr12:22169646..22169670 (25 bp)
TCTCTCAAAAGTTTACATTAATTGC
LOC_Os12g36240
Os.9169.1.S1_x_at--397--1211Chr12:22169637..22169661 (25 bp)
AGTTTACATTAATTGCTGATAGCTC
LOC_Os12g36240
Os.9169.1.S1_x_at--1139--6811Chr12:22169636..22169660 (25 bp)
GTTTACATTAATTGCTGATAGCTCA
LOC_Os12g36240
Os.9169.1.S1_x_at--638--2071Chr12:22169632..22169656 (25 bp)
ACATTAATTGCTGATAGCTCATCAT
LOC_Os12g36240
Os.9169.1.S1_x_at--530--7071Chr12:22169595..22169619 (25 bp)
GTCCGGAGGTGTGAGGTCGTCGGCG
LOC_Os12g36240
Os.9169.1.S1_x_at--571--1032Chr01:37190596..37190689 (24 bp)
AGGTCGTCGGCGAGATGAGCTCCGG
NONE
Os.9169.1.S1_x_at--176--1371Chr12:22169363..22169387 (25 bp)
AGAGCTAGCTACTAGCCTCATCTGC
LOC_Os12g36240
Os.9169.1.S1_x_at--30--8811NONE
TGTTGGTTTTACCCCTACGCACGTG
NONE
Os.9169.1.S1_x_at--204--10211Chr12:22169234..22169659 (25 bp)
TTTACCCCTACGCACGTGTTAATGT
LOC_Os12g36240
Os.9169.1.S1_x_at--389--10471Chr12:22169233..22169253 (21 bp)
TTACCCCTACGCACGTGTTAATGTT
LOC_Os12g36240
Os.9169.1.S1_x_at--27--9971Chr12:22169232..22169253 (22 bp)
TACCCCTACGCACGTGTTAATGTTT
LOC_Os12g36240
Target Sequence 
TCTCTCAAAAGTTTACATTAATTGCTGATAGCTCATCATCAGTTTGATCGTGTCCGGAGGTGTGAGGTCGTCGGCGAGAT
GAGCTCCGGCGGCGAGGAGGGGAAGACGTCGTGGCCGGAGGTGGTGGGGCTGCGGGCGGAGGAGGCGAAGAAGGTGATCC
TCAAGGACATGCCCGACGCCGACATCGTCGTGGTTCCGGTGGGGACGCCGGTGACCATGGACTTCCGCCCCAACCGCGTC
CGCATCTTCGTCGACACCGTCGCCGGCACCCCCACCATCGGCTAGAGCTAGCTACTAGCCTCATCTGCCTGCCTTCAGCA
TCCTGCTTATCTTAATTAAATAATCACATGCACGCAAGTGATATGTACTGTGCATGTTTCGATCGATCCATCCCCCATCT
GAATAATGTTGGTTTTACCCCTACGCACGTGTTAATGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9169.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis