Browse Element(s) Details


Os.5218.1.S1_at

Description gb:AK070054.1
DB_XREF= gi:32980078
TID=Os.5218.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039G14, full insert sequence.
FL= gb:AK058388.1 gb:AK070054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3619411/11Nucleoside diphosphate kinase 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36160OsAffx.7804.1.S1_at11/1112+22127940..22128995hypothetical protein
LOC_Os12g36170Os.53964.1.S1_at11/1112+22130214..22136367G14587-6, putative, expressed
LOC_Os12g36180Os.10153.1.S2_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.10153.1.S1_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.54204.1.S1_at1/1112+22139829..22147027expressed protein
LOC_Os12g36194Os.5218.1.S1_at11/1112+22149447..22156123Nucleoside diphosphate kinase 2, chloroplast precursor, putative, expressed
LOC_Os12g36210NANA12+22159870..22160378Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36220Os.9273.1.S1_x_at9/1112+22164073..22164918MPI, putative
LOC_Os12g36230Os.52447.1.S1_x_at1/1112+22167689..22168066retrotransposon, putative, centromere-specific
LOC_Os12g36240Os.9169.1.S1_x_at10/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36240Os.9273.1.S1_x_at1/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36250NANA12+22172827..22173273retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36260NANA12+22174374..22178732retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36270Os.17439.1.S1_at11/1112+22180505..22185525expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009585biological_processred, far-red light phototransduction
GO:0009734biological_processauxin mediated signaling pathway
GO:0042542biological_processresponse to hydrogen peroxide
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0004550molecular_functionnucleoside diphosphate kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5218.1.S1_at--746--5651Chr12:22155299..22155323 (25 bp)
GACAGTCCTGATAACGGCAAGCGTG
LOC_Os12g36194
Os.5218.1.S1_at--729--7611Chr12:22155621..22155645 (25 bp)
GGGAATCTGTTCTGACACCATGGCT
LOC_Os12g36194
Os.5218.1.S1_at--78--7071Chr12:22155652..22155676 (25 bp)
GTAATGCTCCCAGATCAGTGCAAGA
LOC_Os12g36194
Os.5218.1.S1_at--490--2571Chr12:22155676..22155700 (25 bp)
AACTGGATGCAGTGCTTGTTCTTGA
LOC_Os12g36194
Os.5218.1.S1_at--787--5711Chr12:22155829..22155853 (25 bp)
GACCGATTACTCTCTGTTGTCAAAT
LOC_Os12g36194
Os.5218.1.S1_at--760--7091Chr12:22155847..22155871 (25 bp)
GTCAAATCTCCTGGCATGTCTGTAA
LOC_Os12g36194
Os.5218.1.S1_at--762--3131Chr12:22155936..22155960 (25 bp)
AATTATCTCAGGCAGTTGACCGATG
LOC_Os12g36194
Os.5218.1.S1_at--600--8731Chr12:22155967..22155991 (25 bp)
TGTCACTGTTGTACTATAGCTCCCA
LOC_Os12g36194
Os.5218.1.S1_at--588--9991Chr12:22155983..22156007 (25 bp)
TAGCTCCCAGCAGAGGTGAACTCGT
LOC_Os12g36194
Os.5218.1.S1_at--503--6311Chr12:22156033..22156057 (25 bp)
GATGAGCCATATCTTGATCAGCAGT
LOC_Os12g36194
Os.5218.1.S1_at--1109--3351Chr12:22156069..22156093 (25 bp)
CACCGTATTGGTGTTCAACCCACAA
LOC_Os12g36194
Target Sequence 
GACAGTCCTGATAACGGCAAGCGTGAAATCGCTCTATGGTTCAAAGAAGNCGAACTCTGCGAATGGGAATCTGTTCTGAC
ACCATGGCTTGTAGAGTAATGCTCCCAGATCAGTGCAAGAACTGGATGCAGTGCTTGTTCTTGATTTGAGGGGTTATGTA
TGAGTTCAGATCAGCAGAGTAAAGTANCTTATACCAAAGCTCGGCCTTCTCATGANTGTACACCCTGACATTCCCCTTTT
TTGTAATACCCAACATTCCCTTTTTTGCGTTTGACCGATTACTCTCTGTTGTCAAATCTCCTGGCATGTCTGTAATTGGT
TCAGAACAATACCAGCAAAGCTCCAACTTCCAAGTCATTATGCAGATGAATGNGTTCAAAATTATCTCAGGCAGTTGACC
GATGACTGATTGTCACTGTTGTACTATAGCTCCCAGCAGAGGTGAACTCGTGCAGAGTTGCAGAGTTCATTTGGCTGATG
AGCCATATCTTGATCAGCAGTTATGAAATTGTCACCGTATTGGTGTTCAACCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis