Browse Element(s) Details


Os.9273.1.S1_x_at

Description gb:BE040242
DB_XREF= gi:8335258
DB_XREF=OE06D07
TID=Os.9273.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9273 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_030435.1 (A.thaliana) putative protease inhibitor (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g362209/11MPI, putative
LOC_Os12g362401/11Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36180Os.10153.1.S2_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.10153.1.S1_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.54204.1.S1_at1/1112+22139829..22147027expressed protein
LOC_Os12g36194Os.5218.1.S1_at11/1112+22149447..22156123Nucleoside diphosphate kinase 2, chloroplast precursor, putative, expressed
LOC_Os12g36210NANA12+22159870..22160378Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36220Os.9273.1.S1_x_at9/1112+22164073..22164918MPI, putative
LOC_Os12g36230Os.52447.1.S1_x_at1/1112+22167689..22168066retrotransposon, putative, centromere-specific
LOC_Os12g36240Os.9169.1.S1_x_at10/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36240Os.9273.1.S1_x_at1/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36250NANA12+22172827..22173273retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36260NANA12+22174374..22178732retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36270Os.17439.1.S1_at11/1112+22180505..22185525expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9273.1.S1_x_at--963--392Chr12:22164931..22164955 (25 bp)
ATCAGTTGATCGTGTCCGGAGGTGT
NONE
Os.9273.1.S1_x_at--191--6151Chr12:22164913..22164937 (25 bp)
GAGGTGTGAGAGGTCGGCGATGAGC
NONE
Os.9273.1.S1_x_at--610--1591Chr12:22164891..22164915 (25 bp)
AGCTCCGGCGGCAAGCAGGACGGTG
LOC_Os12g36220
Os.9273.1.S1_x_at--738--131Chr12:22164613..22164637 (25 bp)
ATTAAATAATGATCACATGCACTCA
LOC_Os12g36220
Os.9273.1.S1_x_at--638--10111Chr12:22164583..22164607 (25 bp)
TATGTACTGTGCATGTTCCGATCGA
LOC_Os12g36220
Os.9273.1.S1_x_at--311--9931Chr12:22164579..22164603 (25 bp)
TACTGTGCATGTTCCGATCGATCCA
LOC_Os12g36220
Os.9273.1.S1_x_at--562--9231Chr12:22164554..22164578 (25 bp)
TCCTCATCTGAATCATGTTTTACCT
LOC_Os12g36220
Os.9273.1.S1_x_at--817--4291Chr12:22164553..22164577 (25 bp)
CCTCATCTGAATCATGTTTTACCTA
LOC_Os12g36220
Os.9273.1.S1_x_at--959--9231Chr12:22164551..22164575 (25 bp)
TCATCTGAATCATGTTTTACCTACG
LOC_Os12g36220
Os.9273.1.S1_x_at--202--3531Chr12:22164550..22164574 (25 bp)
CATCTGAATCATGTTTTACCTACGT
LOC_Os12g36220
Os.9273.1.S1_x_at--746--3511Chr12:22164541..22164565 (25 bp)
CATGTTTTACCTACGTGTTAATGTT
LOC_Os12g36220
Target Sequence 
ATCAGTTGATCGTGTCCGGAGGTGTGAGAGGTCGGCGATGAGCTCCGGCGGCAAGCAGGACGGTGCGGCGGCGGCGGGCG
AGGAGGAGCGGAAGACGTCGTGGCCGGAGGTGGTGGGGCTGCCGGTGGAGGAGGCGAAGAAGGTGATCCTCAAGGACATG
CCCGACGCCGACATCGTCGTGCTTCCGGCGGGGTCGCCGGNNNNTGACCAAGGACTTCCGCCCCAACCGCGTCCGCATCT
TCGTCGACACCGTCGCCGGCACCCCCACCATCGGCTAGCCTGCCTCATCTGCCTGCCTTCNGCATCCTGCTTATCTTAAT
TAAATAATGATCACATGCACTCAAGTGATATGTACTGTGCATGTTCCGATCGATCCATCCTCATCTGAATCATGTTTTAC
CTACGTGTTAATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9273.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis