Browse Element(s) Details


Os.17439.1.S1_at

Description gb:AK065912.1
DB_XREF= gi:32975930
TID=Os.17439.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17439 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043P10, full insert sequence.
FL= gb:AK065912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3627011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36194Os.5218.1.S1_at11/1112+22149447..22156123Nucleoside diphosphate kinase 2, chloroplast precursor, putative, expressed
LOC_Os12g36210NANA12+22159870..22160378Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36220Os.9273.1.S1_x_at9/1112+22164073..22164918MPI, putative
LOC_Os12g36230Os.52447.1.S1_x_at1/1112+22167689..22168066retrotransposon, putative, centromere-specific
LOC_Os12g36240Os.9169.1.S1_x_at10/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36240Os.9273.1.S1_x_at1/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36250NANA12+22172827..22173273retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36260NANA12+22174374..22178732retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36270Os.17439.1.S1_at11/1112+22180505..22185525expressed protein
LOC_Os12g36300OsAffx.7806.1.S1_at11/1112+22192757..22193038hypothetical protein
LOC_Os12g36310OsAffx.7807.1.S1_at11/1112+22196436..22199755expressed protein
LOC_Os12g36310Os.55356.1.S1_x_at1/1112+22196436..22199755expressed protein
LOC_Os12g36310Os.55356.1.S1_at1/1112+22196436..22199755expressed protein
LOC_Os12g36320OsAffx.32054.1.S1_at11/1112+22204348..22205725hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17439.1.S1_at--843--2011Chr12:22184965..22184989 (25 bp)
ACTAATCGTTAGACATGGAAGCCGT
LOC_Os12g36270
Os.17439.1.S1_at--888--2111Chr12:22184977..22185001 (25 bp)
ACATGGAAGCCGTTACACCGTAGAA
LOC_Os12g36270
Os.17439.1.S1_at--143--2951Chr12:22185032..22185056 (25 bp)
AAGGCTGCGAGGAACATGTCGGAAA
LOC_Os12g36270
Os.17439.1.S1_at--907--951Chr12:22185060..22185084 (25 bp)
AGGACATCATGGTTATCTCTGGCTG
LOC_Os12g36270
Os.17439.1.S1_at--1093--811Chr12:22185068..22185092 (25 bp)
ATGGTTATCTCTGGCTGTAGCAGCA
LOC_Os12g36270
Os.17439.1.S1_at--1019--1511Chr12:22185086..22185110 (25 bp)
AGCAGCAGCCTAAAGACTCTTGGTT
LOC_Os12g36270
Os.17439.1.S1_at--502--5411Chr12:22185122..22185146 (25 bp)
GAAGCTGAGGAACTCCTGCCTAGAG
LOC_Os12g36270
Os.17439.1.S1_at--1028--6451Chr12:22185169..22185193 (25 bp)
GATAATTGAGCATCCTAGCTGTGTC
LOC_Os12g36270
Os.17439.1.S1_at--565--311Chr12:22185244..22185268 (25 bp)
ATACCCTCATTGGAAAACTGTGTGC
LOC_Os12g36270
Os.17439.1.S1_at--893--3311Chr12:22185393..22185417 (25 bp)
CACTTTTGTACATTCCATTTTGCTG
LOC_Os12g36270
Os.17439.1.S1_at--423--10371Chr12:22185430..22185454 (25 bp)
TTTTTTCTACTCTTTCCCAATCATG
LOC_Os12g36270
Target Sequence 
ACTAATCGTTAGACATGGAAGCCGTTACACCGTAGAANNANCAGAGAACTTGATNAAATCACTGTNGAAGGCTGCGAGGA
ACATGTCGGAAATNGAGGACATCATGGTTATCTCTGGCTGTAGCAGCAGCCTAAAGACTCTTGGTTCCCTNGTGAAAGAA
GCTGAGGAACTCCTGCCTAGAGNNAGGGCATCCGAAATGGAAGTGATAATTGAGCATCCTAGCTGTGTCANATCGAAATC
AGATNAATTAAATCGTACATAATCTGTATTATTTTAATCCATACCCTCATTGGAAAACTGTGTGCCGGGGAAATCTGATA
ATCGATCTGAAAACCGAAATTAAAAATTACTCGTGCCGGNCAGTAATAAAATCAAAGTGAAAATCGGCCTTTAATCANCT
GAGGCCAATGTATAGTATTTTTTTTCTTACACTTTTGTACATTCCATTTTGCTGNTCTTCTCTTCTTTTTTTCTACTCTT
TCCCAATCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis