Browse Element(s) Details


OsAffx.32054.1.S1_at

Description tigr:9640.m03518
TID=OsAffx.32054.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3632011/11hypothetical protein
LOC_Os01g118601/11DJ-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36270Os.17439.1.S1_at11/1112+22180505..22185525expressed protein
LOC_Os12g36300OsAffx.7806.1.S1_at11/1112+22192757..22193038hypothetical protein
LOC_Os12g36310OsAffx.7807.1.S1_at11/1112+22196436..22199755expressed protein
LOC_Os12g36310Os.55356.1.S1_x_at1/1112+22196436..22199755expressed protein
LOC_Os12g36310Os.55356.1.S1_at1/1112+22196436..22199755expressed protein
LOC_Os12g36320OsAffx.32054.1.S1_at11/1112+22204348..22205725hypothetical protein
LOC_Os12g36330OsAffx.19985.1.S1_at11/1112+22211311..22213339hypothetical protein
LOC_Os12g36340NANA12+22215017..22216003hypothetical protein
LOC_Os12g36350OsAffx.7809.1.S1_at11/1112+22218928..22221282hypothetical protein
LOC_Os12g36360Os.46610.1.S1_x_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36360OsAffx.22143.1.S1_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36360Os.11220.1.S1_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36360Os.53292.1.S1_at1/1112+22226753..22230339hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009228biological_processthiamin biosynthesis
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32054.1.S1_at--1162--271Chr12:22205135..22205159 (25 bp)
ATAGTAGCTGGATCCGTTCACGGTT
LOC_Os12g36320
OsAffx.32054.1.S1_at--253--8571Chr12:22205143..22205167 (25 bp)
TGGATCCGTTCACGGTTGTCGTCAC
LOC_Os12g36320
OsAffx.32054.1.S1_at--454--4531Chr12:22205200..22205224 (25 bp)
GCCGCCGGATCTACCGCGCGAGAAA
LOC_Os12g36320
OsAffx.32054.1.S1_at--553--6013Chr12:22205380..22205404 (25 bp)
GAGAGAGCGGCCACCAATGAGGGAG
LOC_Os12g36320
OsAffx.32054.1.S1_at--382--5091Chr12:22205488..22205512 (25 bp)
GCACCGCCGCAGTCGCTTGTGAGGG
LOC_Os12g36320
OsAffx.32054.1.S1_at--101--4531Chr12:22205524..22205548 (25 bp)
GCCGCTGTCGCTATTCGATCGAGAC
LOC_Os12g36320
OsAffx.32054.1.S1_at--553--7231Chr12:22205530..22205554 (25 bp)
GTCGCTATTCGATCGAGACAGAGAG
LOC_Os12g36320
OsAffx.32054.1.S1_at--592--7671Chr12:22205624..22205648 (25 bp)
GGGATTAATCTGAACCGTCCATTCA
LOC_Os12g36320
OsAffx.32054.1.S1_at--979--9752Chr12:22205629..22205653 (25 bp)
TAATCTGAACCGTCCATTCAATCAG
LOC_Os12g36320
OsAffx.32054.1.S1_at--694--3591Chr12:22205643..22205667 (25 bp)
CATTCAATCAGACGGCTTTGGCTTC
LOC_Os12g36320
OsAffx.32054.1.S1_at--545--10231Chr12:22205659..22205683 (25 bp)
TTTGGCTTCTCTCGCATTGGGCCGC
LOC_Os12g36320
Target Sequence 
ATAGTAGCTGGATCCGTTCACGGTTGTCGTCACCACCGACGGATCCAGCCGCCGATGCTGCCACCGCCGCCGGATCTACC
GCGCGAGAAAGGCGAGAGGGGGCGGAGGGAGCCGCTACCGCCGGATCCGCCCGCAACTGCCGTCGACGTCGCCACCATCC
TCGGATCCGCCTGCGTCCGCCGCCAACCCGCCGCCACTGCGAGAGGGAGAGGGAGATGAGAGGGAGAGGGAGGCGAGATG
GGGCGGAGAGAGCGGCCACCAATGAGGGAGGTGAGACGGGGCGGAGGGCGCGGCCGCAGCCACTCGTTGGGGAGAGGACG
CCGCCTCCGCCGCTCGTGGGAAGTGGGGGAAGGGCACCGCCGCAGTCGCTTGTGAGGGGGAAGGGCGCCGCCGCTGTCGC
TATTCGATCGAGACAGAGAGGAGGGATCGGTGGCAGGGAGGAAATGAAATTTAAGGTTGGGATTAATCTGAACCGTCCAT
TCAATCAGACGGCTTTGGCTTCTCTCGCATTGGGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis