Browse Element(s) Details


Os.11220.1.S1_at

Description gb:AK072190.1
DB_XREF= gi:32982213
TID=Os.11220.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146F18, full insert sequence.
FL= gb:AK072190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2068011/11expressed protein
LOC_Os08g146101/11Helicase conserved C-terminal domain containing protein
LOC_Os10g101901/11ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os12g078701/11dehydration-responsive protein, putative
LOC_Os11g202391/11expressed protein
LOC_Os12g363601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20644OsAffx.17091.1.S1_at11/118+12401693..12402157expressed protein
LOC_Os08g20660Os.27359.1.S1_at11/118+12405895..12418726Sucrose-phosphate synthase 1, putative, expressed
LOC_Os08g20670OsAffx.29289.1.S1_at10/118+12420977..12422121hypothetical protein
LOC_Os08g20680Os.11220.1.S1_at11/118+12423980..12424983expressed protein
LOC_Os08g20690OsAffx.5883.1.S1_at10/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_at3/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_x_at2/118+12426836..12429826hypothetical protein
LOC_Os08g20700OsAffx.31869.1.S1_at9/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.5.S1_x_at4/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.2.S1_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.3.S1_s_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20720NANA8+12442451..12448123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20730Os.10285.1.S1_at11/118+12449911..12452062Peroxidase 40 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11220.1.S1_at--218--4291Chr08:12424470..12424494 (25 bp)
CCTCCCCTTCGATCTAGCTGTATGG
LOC_Os08g20680
Os.11220.1.S1_at--845--6811Chr08:12424410..12424434 (25 bp)
GTTTTTCTTGTCTCTGATTCTATTT
LOC_Os08g20680
Os.11220.1.S1_at--586--6574Chr09:1550490..1550584 (24 bp)
GATTCTATTTGTCTGATTCCGAGTG
NONE
Os.11220.1.S1_at--854--46112Chr12:22190993..22191014 (22 bp)
GCGATTGAATCGGACTTTCTTTTTT
NONE
Os.11220.1.S1_at--835--10352Chr08:12424233..12424257 (25 bp)
TTTTTGGCTCGCGATTGGGATTCGA
LOC_Os08g20680
Os.11220.1.S1_at--60--2951Chr08:12424173..12424197 (25 bp)
AAGGCGGTCCTGTGACGATTGTGAT
LOC_Os08g20680
Os.11220.1.S1_at--1129--197Chr12:22230003..22230028 (25 bp)
ATTTGTGTGATATGGAATTCCGACT
LOC_Os12g36360
Os.11220.1.S1_at--868--3071Chr08:12424046..12424070 (25 bp)
AATCACCGCAAGGATATGTATGTAT
LOC_Os08g20680
Os.11220.1.S1_at--626--5352Chr08:12424021..12424045 (25 bp)
GAAGATATTAGCAGAGTTCTCTCTT
LOC_Os08g20680
Os.11220.1.S1_at--97--3771Chr08:12424003..12424027 (25 bp)
CTCTCTTTTATAAATCATCCCTTGG
LOC_Os08g20680
Os.11220.1.S1_at--632--3531Chr08:12423988..12424012 (25 bp)
CATCCCTTGGATTGAATAAATACGA
LOC_Os08g20680
Target Sequence 
CCTCCCCTTCGATCTAGCTGTATGGGAATTTTTGGATAAAATTTGTGTGTATATGCTTCNGTTTTTCTTGTCTCTGATTC
TATTTGTCTGATTCCGAGTGGGATTTAGGGAGGGGGGATTTGTGTAATGTGAGATTTGGGGAGGGGGGGGGGGACGGGGA
CGGGCGATTGAATCGGACATGTGAGATTTTGGGAGGGGGGGGGACGGGGACGGGCGATTGAATCGGACTTTCTTTTTTTT
GGCTCGCGATTGGGATTCGAGGGCGGGGGCTGCTGGTGCGCACCGCCGACGGACGAAGGCGGTCCTGTGACGATTGTGAT
GATGTGGGATTTGAAGAGGAGGTGTGCTCAATGTGGGATTCTATTTGTGTGATATGGAATTCCGACTGGGATTTTAGGGG
GGGAAGGGGGTGTCGGACGAAAAATCACCGCAAGGATATGTATGTATGAAGATATTAGCAGAGTTCTCTCTTTTATAAAT
CATCCCTTGGATTGAATAAATACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis