Browse Element(s) Details


OsAffx.5883.1.S1_at

Description tigr:9636.m02036
TID=OsAffx.5883.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2069010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20644OsAffx.17091.1.S1_at11/118+12401693..12402157expressed protein
LOC_Os08g20660Os.27359.1.S1_at11/118+12405895..12418726Sucrose-phosphate synthase 1, putative, expressed
LOC_Os08g20670OsAffx.29289.1.S1_at10/118+12420977..12422121hypothetical protein
LOC_Os08g20680Os.11220.1.S1_at11/118+12423980..12424983expressed protein
LOC_Os08g20690OsAffx.5883.1.S1_at10/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_at3/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_x_at2/118+12426836..12429826hypothetical protein
LOC_Os08g20700OsAffx.31869.1.S1_at9/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.5.S1_x_at4/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.2.S1_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.3.S1_s_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20720NANA8+12442451..12448123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20730Os.10285.1.S1_at11/118+12449911..12452062Peroxidase 40 precursor, putative, expressed
LOC_Os08g20740OsAffx.29290.1.S1_at11/118+12453741..12454064hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5883.1.S1_at--719--9311Chr08:12429112..12429136 (25 bp)
TCCCGGCACTTGCACTTGAGACGTA
LOC_Os08g20690
OsAffx.5883.1.S1_at--7--3331Chr08:12429124..12429148 (25 bp)
CACTTGAGACGTACGTGCAGCAGGA
LOC_Os08g20690
OsAffx.5883.1.S1_at--612--9931Chr08:12429135..12429159 (25 bp)
TACGTGCAGCAGGAGGATGTCGCAA
LOC_Os08g20690
OsAffx.5883.1.S1_at--652--6271Chr08:12429150..12429174 (25 bp)
GATGTCGCAAAGACTGTCCGTGGAG
LOC_Os08g20690
OsAffx.5883.1.S1_at--452--8551Chr08:12429170..12429191 (22 bp)
TGGAGACGAACACGGCGATGACTTT
LOC_Os08g20690
OsAffx.5883.1.S1_at--256--1951Chr08:12429181..12429264 (25 bp)
ACGGCGATGACTTTGCTGTGTTCTC
LOC_Os08g20690
OsAffx.5883.1.S1_at--1161--2031NONE
ACTTTGCTGTGTTCTCGGGAGACAA
NONE
OsAffx.5883.1.S1_at--443--10591Chr08:12429260..12429284 (25 bp)
TTCTCGGGAGACAAGAACAACTTGA
LOC_Os08g20690
OsAffx.5883.1.S1_at--1130--5811Chr08:12429388..12429412 (25 bp)
GACCTTGACGGGAGTGAAGAAAGAC
LOC_Os08g20690
OsAffx.5883.1.S1_at--1099--5031Chr08:12429740..12429764 (25 bp)
GCAGAGATTGACCAACTGGCGCAGT
LOC_Os08g20690
OsAffx.5883.1.S1_at--778--6591Chr08:12429745..12429769 (25 bp)
GATTGACCAACTGGCGCAGTCGATG
LOC_Os08g20690
Target Sequence 
TCCCGGCACTTGCACTTGAGACGTACGTGCAGCAGGAGGATGTCGCAAAGACTGTCCGTGGAGACGAACACGGCGATGAC
TTTGCTGTGTTCTCGGGAGACAAGAACAACTTGACTCAGTCCTTTCCATGCTGGGCAGACCTCGAGAGTGCGTTGGCCGA
CCGAAATCGTCGAATCCAATACTGGAAGACGAAGTTTGAGGTGGCCGAACTCGAGAAGACCTTGACGGGAGTGAAGAAAG
ACCAGGCTGTGGAAGCCCTCCGAGGTCGCGAGCTCGAAGGGATCGGCAAGCGCATCGACGAGGCCCTGAAGCAGGAGTGT
CGTCGGTCGAGCCACTATGCCGGAGGGCATGTGCTGGCCTGTATCCGAGATCACCGCCCGCAGCTGCAGCTCGAGTTCCT
CCATGAAGGGTTCTCGCGTTCTCGGAGGACTCCCGCAGAGATTGACCAACTGGCGCAGTCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis