Browse Element(s) Details


OsAffx.29290.1.S1_at

Description tigr:9636.m02040
TID=OsAffx.29290.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2074011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20690OsAffx.5883.1.S1_at10/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_at3/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_x_at2/118+12426836..12429826hypothetical protein
LOC_Os08g20700OsAffx.31869.1.S1_at9/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.5.S1_x_at4/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.2.S1_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.3.S1_s_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20720NANA8+12442451..12448123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20730Os.10285.1.S1_at11/118+12449911..12452062Peroxidase 40 precursor, putative, expressed
LOC_Os08g20740OsAffx.29290.1.S1_at11/118+12453741..12454064hypothetical protein
LOC_Os08g20750NANA8+12454968..12456281retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20760OsAffx.29291.1.S1_at11/118+12458436..12458738hypothetical protein
LOC_Os08g20760OsAffx.13151.1.S1_x_at6/118+12458436..12458738hypothetical protein
LOC_Os08g20770NANA8+12462754..12467061retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20780Os.45173.1.S1_x_at3/118+12467328..12469185retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29290.1.S1_at--446--4151Chr08:12453852..12453876 (25 bp)
CGCCGTTCGTCCCTAGAGTATAGGG
LOC_Os08g20740
OsAffx.29290.1.S1_at--589--4231Chr08:12453854..12453878 (25 bp)
CCGTTCGTCCCTAGAGTATAGGGAG
LOC_Os08g20740
OsAffx.29290.1.S1_at--951--7691Chr08:12453880..12453904 (25 bp)
GGGTCACTGCATTCATTAGTTTTGT
LOC_Os08g20740
OsAffx.29290.1.S1_at--199--7831Chr08:12453881..12453905 (25 bp)
GGTCACTGCATTCATTAGTTTTGTG
LOC_Os08g20740
OsAffx.29290.1.S1_at--685--3331Chr08:12453884..12453908 (25 bp)
CACTGCATTCATTAGTTTTGTGGAT
LOC_Os08g20740
OsAffx.29290.1.S1_at--147--10451Chr08:12453895..12453919 (25 bp)
TTAGTTTTGTGGATAATGACATGAA
LOC_Os08g20740
OsAffx.29290.1.S1_at--569--6271Chr08:12453974..12453998 (25 bp)
GATGTTCGAGAATAGTTTATGGGTT
LOC_Os08g20740
OsAffx.29290.1.S1_at--604--6711Chr08:12453977..12454001 (25 bp)
GTTCGAGAATAGTTTATGGGTTCAA
LOC_Os08g20740
OsAffx.29290.1.S1_at--32--811Chr08:12453992..12454016 (25 bp)
ATGGGTTCAATCTCATATGATCCGT
LOC_Os08g20740
OsAffx.29290.1.S1_at--866--7671Chr08:12453994..12454018 (25 bp)
GGGTTCAATCTCATATGATCCGTAT
LOC_Os08g20740
OsAffx.29290.1.S1_at--669--6371Chr08:12454010..12454034 (25 bp)
GATCCGTATAAGATTCATGGACGAC
LOC_Os08g20740
Target Sequence 
CGCCGTTCGTCCCTAGAGTATAGGGAGGGGGTCACTGCATTCATTAGTTTTGTGGATAATGACATGAAAAATAATTGTAA
TAATGAGAAGATGTTCGAGAATAGTTTATGGGTTCAATCTCATATGATCCGTATAAGATTCATGGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis