Browse Element(s) Details


OsAffx.29291.1.S1_at

Description tigr:9636.m02042
TID=OsAffx.29291.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2076011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20700OsAffx.31869.1.S1_at9/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.5.S1_x_at4/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.2.S1_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.3.S1_s_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20720NANA8+12442451..12448123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20730Os.10285.1.S1_at11/118+12449911..12452062Peroxidase 40 precursor, putative, expressed
LOC_Os08g20740OsAffx.29290.1.S1_at11/118+12453741..12454064hypothetical protein
LOC_Os08g20750NANA8+12454968..12456281retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20760OsAffx.29291.1.S1_at11/118+12458436..12458738hypothetical protein
LOC_Os08g20760OsAffx.13151.1.S1_x_at6/118+12458436..12458738hypothetical protein
LOC_Os08g20770NANA8+12462754..12467061retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20780Os.45173.1.S1_x_at3/118+12467328..12469185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20790NANA8+12480024..12482668retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20800OsAffx.6485.1.S1_at1/118+12482765..12486726retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29291.1.S1_at--99--6991Chr08:12458467..12458491 (25 bp)
GTACCCTGGCGCTGAGATGGAACTT
LOC_Os08g20760
OsAffx.29291.1.S1_at--84--9951Chr08:12458468..12458492 (25 bp)
TACCCTGGCGCTGAGATGGAACTTA
LOC_Os08g20760
OsAffx.29291.1.S1_at--539--1811Chr08:12458469..12458493 (25 bp)
ACCCTGGCGCTGAGATGGAACTTAG
LOC_Os08g20760
OsAffx.29291.1.S1_at--1079--4171Chr08:12458470..12458494 (25 bp)
CCCTGGCGCTGAGATGGAACTTAGC
LOC_Os08g20760
OsAffx.29291.1.S1_at--1161--5971Chr08:12458480..12458504 (25 bp)
GAGATGGAACTTAGCAAGGTCGGCC
LOC_Os08g20760
OsAffx.29291.1.S1_at--872--6231Chr08:12458482..12458506 (25 bp)
GATGGAACTTAGCAAGGTCGGCCAT
LOC_Os08g20760
OsAffx.29291.1.S1_at--320--8171Chr08:12458485..12458509 (25 bp)
GGAACTTAGCAAGGTCGGCCATGGC
LOC_Os08g20760
OsAffx.29291.1.S1_at--868--5471Chr08:12458486..12458510 (25 bp)
GAACTTAGCAAGGTCGGCCATGGCC
LOC_Os08g20760
OsAffx.29291.1.S1_at--515--2511Chr08:12458487..12458511 (25 bp)
AACTTAGCAAGGTCGGCCATGGCCC
LOC_Os08g20760
OsAffx.29291.1.S1_at--184--1491Chr08:12458492..12458516 (25 bp)
AGCAAGGTCGGCCATGGCCCAGTCC
LOC_Os08g20760
OsAffx.29291.1.S1_at--483--1651Chr08:12458680..12458704 (25 bp)
AGCGCCAAGGCGTCTGGCACGGGCC
LOC_Os08g20760
Target Sequence 
GTACCCTGGCGCTGAGATGGAACTTAGCAAGGTCGGCCATGGCCCAGTCCAGCAAGCCTTCTGGATGGCTTGCGGGCTGG
GACGTTAGCGCCAGCCATAATGGCGCTGGCCCTGGGCACCTCAGCGCCAAGGCACCTAGCGCTAAGGTTGGACTTAGCCG
GCTCGGCCATGGCCCAGCCCAGCAAGCCTTTTGGATGGCTGGGCTGGGAGCTCAGCGCCAAGGCGTCTGGCACGGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis