Browse Element(s) Details


OsAffx.13772.1.S1_x_at

Description tigr:9632.m01021
TID=OsAffx.13772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1147011/11hypothetical protein
LOC_Os09g141103/11retrotransposon protein, putative, unclassified
LOC_Os06g299302/11hypothetical protein
LOC_Os08g206902/11hypothetical protein
LOC_Os06g312401/11retrotransposon protein, putative, unclassified
LOC_Os03g334601/11Transposable element protein, putative, Transposase_28
LOC_Os08g174501/11hypothetical protein
LOC_Os11g474491/11hypothetical protein
LOC_Os11g270901/11hypothetical protein
LOC_Os11g295401/11hypothetical protein
LOC_Os01g325101/11transposon protein, putative, unclassified
LOC_Os04g161901/11hypothetical protein
LOC_Os01g243301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11430OsAffx.25981.1.S1_at10/114+6230570..6233423NB-ARC domain containing protein
LOC_Os04g11440Os.52198.1.S1_at11/114+6235994..6238359F-box protein interaction domain containing protein, expressed
LOC_Os04g11440OsAffx.13771.1.S1_x_at11/114+6235994..6238359F-box protein interaction domain containing protein, expressed
LOC_Os04g11450Os.52446.1.S1_at9/114+6242596..6244070F-box domain containing protein, expressed
LOC_Os04g11470OsAffx.13772.1.S1_at11/114+6256254..6258461hypothetical protein
LOC_Os04g11470OsAffx.13772.1.S1_x_at11/114+6256254..6258461hypothetical protein
LOC_Os04g11480OsAffx.10632.1.S1_at2/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11480OsAffx.26189.1.S1_at2/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11480OsAffx.7616.1.S1_at1/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11490NANA4+6264142..6265346retrotransposon protein, putative, unclassified
LOC_Os04g11500OsAffx.29419.3.S1_at2/114+6265599..6268617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11500OsAffx.21161.1.S1_at1/114+6265599..6268617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11510OsAffx.25982.1.S1_at11/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11510Os.55356.1.S1_at1/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11510Os.55356.1.S1_x_at1/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11510OsAffx.25982.4.S1_at1/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11520NANA4+6282001..6283816hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13772.1.S1_x_at--786--1774Chr09:8359844..8359866 (23 bp)
ACCGGATGTCAGAGCTCGAGAACTT
LOC_Os09g14110
OsAffx.13772.1.S1_x_at--614--5971Chr04:6257946..6257970 (25 bp)
GAGAACTTGTCGGAGATCCGCAGCT
LOC_Os04g11470
OsAffx.13772.1.S1_x_at--422--3991Chr04:6258131..6258155 (25 bp)
CGTGGAGACGTGTAACGGGATCTAC
LOC_Os04g11470
OsAffx.13772.1.S1_x_at--628--612Chr04:6258179..6258203 (25 bp)
ATGCGTGAAGCTGGCATACCCTGAC
LOC_Os04g11470
OsAffx.13772.1.S1_x_at--1136--8491Chr04:6258190..6258214 (25 bp)
TGGCATACCCTGACCTCGACATCAA
LOC_Os04g11470
OsAffx.13772.1.S1_x_at--646--3771Chr04:6258204..6258228 (25 bp)
CTCGACATCAAGAGGGTTCTGGATC
LOC_Os04g11470
OsAffx.13772.1.S1_x_at--851--7891Chr04:6258218..6258347 (25 bp)
GGTTCTGGATCAGGAGCTGTTTTCC
LOC_Os04g11470
OsAffx.13772.1.S1_x_at--1104--6431Chr04:6258225..6258354 (25 bp)
GATCAGGAGCTGTTTTCCTTTGTTT
LOC_Os04g11470
OsAffx.13772.1.S1_x_at--138--6817Chr09:8360312..8360334 (23 bp)
GTTTTCCTTTGTTTTCTTAGCATGT
LOC_Os09g14110
OsAffx.13772.1.S1_x_at--314--9555Chr11:28110163..28110183 (21 bp)
TCTTAGCATGTGATTCCGAGTACCT
LOC_Os11g47449
OsAffx.13772.1.S1_x_at--14--4334Chr09:8360348..8360370 (23 bp)
CCTTGTTGTCGTTGTAGAGATGTCG
LOC_Os09g14110
Target Sequence 
ACCGGATGTCAGAGCTCGAGAACTTGTCGGAGATCCGCAGCTCGCTGCGGGTGTCTTACACCGGCCTACACCAACTCGTC
GGGGAGTGCGGCGTGACGACCACTATCCCGGCGACCCCTGACGAGTTCTCGCTGACGTCCTCGCTCGCGGACCTGGCTGT
GGCGATGGAGGAGATCCCCTCCAAGCATGCGGCCAGAATCGGCGTGGAGACGTGTAACGGGATCTACACCGGGGCGTGCC
ATGTCCTCGCATGCGTGAAGCTGGCATACCCTGACCTCGACATCAAGAGGGTTCTGGATCAGGAGCTGTTTTCCTTTGTT
TTCTTAGCATGTGATTCCGAGTACCTTGTTGTCGTTGTAGAGATGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13772.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis