Browse Element(s) Details


Os.52446.1.S1_at

Description gb:AK067184.1
DB_XREF= gi:32977202
TID=Os.52446.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096D22, full insert sequence.
FL= gb:AK067184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g114509/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11420Os.46306.1.S1_x_at8/114+6218593..6221501transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11430OsAffx.25981.1.S1_at10/114+6230570..6233423NB-ARC domain containing protein
LOC_Os04g11440Os.52198.1.S1_at11/114+6235994..6238359F-box protein interaction domain containing protein, expressed
LOC_Os04g11440OsAffx.13771.1.S1_x_at11/114+6235994..6238359F-box protein interaction domain containing protein, expressed
LOC_Os04g11450Os.52446.1.S1_at9/114+6242596..6244070F-box domain containing protein, expressed
LOC_Os04g11470OsAffx.13772.1.S1_at11/114+6256254..6258461hypothetical protein
LOC_Os04g11470OsAffx.13772.1.S1_x_at11/114+6256254..6258461hypothetical protein
LOC_Os04g11480OsAffx.10632.1.S1_at2/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11480OsAffx.26189.1.S1_at2/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11480OsAffx.7616.1.S1_at1/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11490NANA4+6264142..6265346retrotransposon protein, putative, unclassified
LOC_Os04g11500OsAffx.29419.3.S1_at2/114+6265599..6268617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11500OsAffx.21161.1.S1_at1/114+6265599..6268617retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52446.1.S1_at--412--7831Chr04:6242867..6242891 (25 bp)
GGTAATGACATCATGGTTACTCGTA
LOC_Os04g11450
Os.52446.1.S1_at--967--7871Chr04:6242853..6242877 (25 bp)
GGTTACTCGTATGAAGCTTAAACAA
LOC_Os04g11450
Os.52446.1.S1_at--793--2091Chr04:6242817..6242841 (25 bp)
ACATGCATTCTTTCCGTTGCTAAAA
LOC_Os04g11450
Os.52446.1.S1_at--1016--7191Chr04:6242786..6242810 (25 bp)
GTCGTGAATGATTTGCCTTTCATCT
LOC_Os04g11450
Os.52446.1.S1_at--959--471Chr04:6242765..6242789 (25 bp)
ATCTGATGTCTGCTAAATGAAGTTT
LOC_Os04g11450
Os.52446.1.S1_at--17--5951Chr04:6242740..6242764 (25 bp)
GAGCACACAAACTTATTATTTTCTG
LOC_Os04g11450
Os.52446.1.S1_at--560--171Chr04:6242723..6242747 (25 bp)
ATTTTCTGAATTGTGCTTTTATGTA
LOC_Os04g11450
Os.52446.1.S1_at--925--2391NONE
AAACTTCTTAGCTGAACTTATTGCA
NONE
Os.52446.1.S1_at--639--211Chr04:6242639..6242663 (25 bp)
ATTTGGCCACATGAATAGTTGGTTC
LOC_Os04g11450
Os.52446.1.S1_at--548--7371Chr04:6242611..6242635 (25 bp)
GTGACTTATAATGCAAAACCTACTA
LOC_Os04g11450
Os.52446.1.S1_at--588--2351Chr04:6242596..6242620 (25 bp)
AAACCTACTACGTCTTGATTGAATT
NONE
Target Sequence 
GGTAATGACATCATGGTTACTCGTATGAAGCTTAAACAAAGCCTTGTTCCACATGCATTCTTTCCGTTGCTAAAAAGTTA
TGTCGTGAATGATTTGCCTTTCATCTGATGTCTGCTAAATGAAGTTTGAGCACACAAACTTATTATTTTCTGAATTGTGC
TTTTATGTATGAAAACTTCTTAGCTGAACTTATTGCAGATGAATGTGCAACCAGGATACAATAATTGTATTTGGCCACAT
GAATAGTTGGTTCATTGTGACTTATAATGCAAAACCTACTACGTCTTGATTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis