Browse Element(s) Details


OsAffx.25982.1.S1_at

Description tigr:9632.m01026
TID=OsAffx.25982.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1151011/11Methyl-CpG binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11470OsAffx.13772.1.S1_at11/114+6256254..6258461hypothetical protein
LOC_Os04g11470OsAffx.13772.1.S1_x_at11/114+6256254..6258461hypothetical protein
LOC_Os04g11480OsAffx.10632.1.S1_at2/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11480OsAffx.26189.1.S1_at2/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11480OsAffx.7616.1.S1_at1/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11490NANA4+6264142..6265346retrotransposon protein, putative, unclassified
LOC_Os04g11500OsAffx.29419.3.S1_at2/114+6265599..6268617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11500OsAffx.21161.1.S1_at1/114+6265599..6268617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11510OsAffx.25982.1.S1_at11/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11510Os.55356.1.S1_at1/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11510Os.55356.1.S1_x_at1/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11510OsAffx.25982.4.S1_at1/114+6272207..6278197Methyl-CpG binding domain containing protein
LOC_Os04g11520NANA4+6282001..6283816hypothetical protein
LOC_Os04g11530OsAffx.25982.2.S1_at10/114+6294745..6300267Methyl-CpG binding domain containing protein
LOC_Os04g11530OsAffx.25982.3.S1_at1/114+6294745..6300267Methyl-CpG binding domain containing protein
LOC_Os04g11540NANA4+6302127..6304062retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25982.1.S1_at--719--6871Chr04:6274854..6275088 (25 bp)
GTATTCCGTACTATGAGATATTCTG
LOC_Os04g11510
OsAffx.25982.1.S1_at--415--6871Chr04:6274823..6274847 (25 bp)
GTATAAGTTCTAAGCCATCTACTTT
LOC_Os04g11510
OsAffx.25982.1.S1_at--827--1111Chr04:6273574..6273598 (25 bp)
AGTGTTGTACTGTGTCGGGCGCCTA
LOC_Os04g11510
OsAffx.25982.1.S1_at--281--7571Chr04:6273558..6273582 (25 bp)
GGGCGCCTAGTCCTATTTTGGATCT
LOC_Os04g11510
OsAffx.25982.1.S1_at--94--172Chr12:6913190..6913551 (25 bp)
ATTTTGGATCTGCTGGTGTCATCTC
NONE
OsAffx.25982.1.S1_at--953--8491Chr04:6273446..6273470 (25 bp)
TGGCAGTGCTAGTGACGGCATTTGT
LOC_Os04g11510
OsAffx.25982.1.S1_at--880--1931Chr04:6273432..6273456 (25 bp)
ACGGCATTTGTGGTGGATTTGGCTA
LOC_Os04g11510
OsAffx.25982.1.S1_at--257--10831Chr04:6273414..6273438 (25 bp)
TTGGCTACACGGTGCTGGAGGCCAC
LOC_Os04g11510
OsAffx.25982.1.S1_at--1067--7991Chr04:6273398..6273422 (25 bp)
GGAGGCCACACTAACTGTAGCAGTT
LOC_Os04g11510
OsAffx.25982.1.S1_at--152--4731Chr04:6272347..6272368 (22 bp)
GCTGGTGAAGATAGCGACTCTGATT
LOC_Os04g11510
OsAffx.25982.1.S1_at--346--2651Chr04:6272240..6272264 (25 bp)
AACCACTGTCAAGCGCCCTAGAGGG
LOC_Os04g11510
Target Sequence 
GTATTCCGTACTATGAGATATTCTGAAAAACGTATAAGTTCTAAGCCATCTACTTTAAAAAGGTTTAGTGTTGTACTGTG
TCGGGCGCCTAGTCCTATTTTGGATCTGCTGGTGTCATCTCCATGGTGTGGAGGGGTGGTGGTGGTGCTGGAGGTGGCGA
TTGCTGGTGGTCGTCTGGGCAGTTGTGGCTTTGGTGGCAGTGCTAGTGACGGCATTTGTGGTGGATTTGGCTACACGGTG
CTGGAGGCCACACTAACTGTAGCAGTTGCTGGTGAAGATAGCGACTCTGATTGTTCAGATAAACTGCATGAGCCAGGACA
AAACAAGGTCAATCATGTGAAGACTACTCTAAAAGGCAAAGAAGTAATGGCCTCAACCACTGTCAAGCGCCCTAGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis