Browse Element(s) Details


Os.55356.1.S1_x_at

Description gb:AK107927.1
DB_XREF= gi:32993136
TID=Os.55356.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-H10, full insert sequence.
FL= gb:AK107927.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g538701/11expressed protein
LOC_Os06g213501/11hypothetical protein
LOC_Os12g363101/11expressed protein
LOC_Os04g115101/11Methyl-CpG binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53830OsAffx.12629.1.S1_at11/112+32959850..32962563expressed protein
LOC_Os02g53840OsAffx.12630.1.S1_at11/112+32971010..32972057Subtilisin N-terminal Region family protein, expressed
LOC_Os02g53850OsAffx.12631.1.S1_at11/112+32975405..32977751Subtilisin N-terminal Region family protein
LOC_Os02g53860Os.18825.1.S1_at11/112+32979233..32981976subtilase family protein, putative, expressed
LOC_Os02g53870Os.51349.1.S1_at11/112+32985610..32986341expressed protein
LOC_Os02g53870Os.55356.1.S1_x_at1/112+32985610..32986341expressed protein
LOC_Os02g53870Os.35710.2.S1_x_at1/112+32985610..32986341expressed protein
LOC_Os02g53880NANA2+32987710..32987913hypothetical protein
LOC_Os02g53890NANA2+32989888..32990268hypothetical protein
LOC_Os02g53900OsAffx.24858.1.S1_at11/112+32998380..32998763hypothetical protein
LOC_Os02g53910OsAffx.3059.1.S1_at11/112+33002645..33004717Subtilase family protein
LOC_Os02g53920NANA2+33007491..33008047retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53930Os.47463.1.S1_x_at6/112+33009988..33012249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g53930Os.14491.2.S1_x_at5/112+33009988..33012249transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55356.1.S1_x_at--234--2973Chr02:14014186..14014210 (25 bp)
AATGGTCGCCGTCGGCTACTGATGA
NONE
Os.55356.1.S1_x_at--1057--4232Chr02:14014194..14014218 (25 bp)
CCGTCGGCTACTGATGAGTGGCTGA
NONE
Os.55356.1.S1_x_at--10--712Chr02:14014207..14014231 (25 bp)
ATGAGTGGCTGAGCGCGTTCATGTC
NONE
Os.55356.1.S1_x_at--554--4751Chr02:14014214..14014238 (25 bp)
GCTGAGCGCGTTCATGTCTACATCA
NONE
Os.55356.1.S1_x_at--1056--10531Chr02:14014224..14014248 (25 bp)
TTCATGTCTACATCACCGTGCTGGG
NONE
Os.55356.1.S1_x_at--1087--1772Chr02:14014238..14014262 (25 bp)
ACCGTGCTGGGCATGAAGGACATGA
NONE
Os.55356.1.S1_x_at--1111--3492Chr02:14014266..14014290 (25 bp)
CATGGAGCAGTAGCACCGGCGACAG
NONE
Os.55356.1.S1_x_at--550--7691Chr02:14014521..14014545 (25 bp)
GGGTAGATCTGTACTTACACAGCTG
NONE
Os.55356.1.S1_x_at--208--4911Chr12:22197212..22197232 (21 bp)
ATCTGTACTTACACAGCTGTTTCTC
LOC_Os12g36310
Os.55356.1.S1_x_at--929--10314Chr12:19266818..19266842 (25 bp)
TTTCTCTCTCCAATTCTTCCGGATA
NONE
Os.55356.1.S1_x_at--744--9252Chr02:14014579..14014603 (25 bp)
TAATCCCGAGGGTGTCCAGTAGCTA
NONE
Target Sequence 
AATGGTCGCCGTCGGCTACTGATGAGTGGCTGAGCGCGTTCATGTCTACATCACCGTGCTGGGCATGAAGGACATGAAGC
CATGGAGCAGTAGCACCGGCGACAGTGGGCGAGCGAAGGAGGAGCGGCAACGGCAGGCGAGCCTGGGAGGAGCAGCGACA
GCAAGCGAGCGCGGTGGGCGGAGCAGCGACAGTGGGCGAGCATAGGAGGAGCGGCGGCGGCCGCGGGCGAGGTTGAAGGC
GACGGTTGAGAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAACGAGAGAGGGAGAAAAGGATAAGGAAGAAAAAAGAAAAA
GAAAAAAAAATCAAAGGGTAGATCTGTACTTACACAGCTGTTTCTCTCTCCAATTCTTCCGGATATAATAAAATAATCCC
GAGGGTGTCCAGTAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55356.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis